MmuEX6069971 @ mm9
Exon Skipping
Gene
ENSMUSG00000032525 | Nktr
Description
natural killer tumor recognition sequence [Source:MGI Symbol;Acc:MGI:97346]
Coordinates
chr9:121650716-121653262:+
Coord C1 exon
chr9:121650716-121650861
Coord A exon
chr9:121651683-121651905
Coord C2 exon
chr9:121653107-121653262
Length
223 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTAATATCTATTAAGTTT
3' ss Score
4.13
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GGTTCATGTTGTTTTTGGACTGGTAATATCTGGTTTTGAAGTAATTGAACAGATTGAAAATCTGAAAACAGATGCTGCAAGCAGACCTTATGCAGATGTCCGAGTTATTGACTGTGGGGTGCTGGCCACAAAGTTGACAAAAGATG
Seq A exon
TTTTTGAGAAAAAAAGGAAGAAACCAACCTGTTCAGAAGGCTCGGACTCTTCTTCCCGTTCCTCTTCCTCTTCAGAGTCCTCCTCAGAGAGTGAAGTTGAGCGAGAGACAATCAGAAGGAGAAGACATAAGAGGAGGCCAAAAGTCAGACATGCTAAAAAGAGACGGAAAGAAATGAGCAGTTCAGAAGAACCGAGGAGGAAGCGCACAGTAAGCCCTGAAGG
Seq C2 exon
TTATTCTGAGAGGAGTGATGTGAATGAAAAAAGATCAGTTGACTCAAACACTAAAAGAGAAAAGCCTGTTGTCCGCCCAGAAGAGATTCCTCCAGTTCCCGAGAACCGATTTTTACTTAGAAGAGATATGCCTGCTATCACTGTGGAGCCTGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032525-'14-15,'14-13,17-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.960 C2=1.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=PD(24.1=80.0),PF105004=SR-25=PU(20.1=54.0)
A:
PF105004=SR-25=FE(55.2=100)
C2:
PF105004=SR-25=PD(23.9=60.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCATGTTGTTTTTGGACTGGT
R:
TCAGGCTCCACAGTGATAGCA
Band lengths:
299-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: