GgaEX6018089 @ galGal3
Exon Skipping
Gene
ENSGALG00000005282 | NKTR
Description
NA
Coordinates
chr2:1856365-1858203:+
Coord C1 exon
chr2:1856365-1856510
Coord A exon
chr2:1857555-1857777
Coord C2 exon
chr2:1858051-1858203
Length
223 bp
Sequences
Splice sites
3' ss Seq
TTGAAATATCTGTTTCTAAGCTT
3' ss Score
4.19
5' ss Seq
ATGGTGACT
5' ss Score
3.33
Exon sequences
Seq C1 exon
CGTACACGTTGTCTTTGGACTGGTTATTTCTGGTTTTGAAGTAATAGAACAAATAGAAAATCTGAAAACTGATACTGCCAGTAGACCCTATGCAGATGTACGAGTTATTGACTGTGGGGTGCTTGTTACAAAACCTGCAAAAGACG
Seq A exon
CTTTGGAGAAGAAGAAGAAAGTCTGTTCTGACTCCGAAGCTTCAGACTCCTCCTCCAGTGGATCAGACCCTTCAGAAACCTCGTCTGAAAGTGAAGCTGAAGATGAAAGAAGCAGAAGAAGAAAGCGTAAAAGAAGAGCTAAAACCAAACAGTCAAGAAAACGGAGGAAGGAAGAGAGGAAGAAAGAGGATCTGAGAAGCAAGCGAGCCTCAAACCAAAGATG
Seq C2 exon
CCTTTCTGACAAGAGCGATGTAACAGAAAAAGCAGTGGATGTCAGCACAAAGAGGGATAAGCCTGTGGTACGTCCTGAAGAAATTCCTCCAGTGCCTGAAAATAGATTTTTGCTGAGAAGAGATGTGCCTGTTGTCAGTACAGAACCTGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005282-'9-15,'9-13,10-15=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.960 C2=1.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=PD(24.1=80.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGTTGTCTTTGGACTGGT
R:
TCAGGTTCTGTACTGACAACAGG
Band lengths:
293-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]