RnoEX0060011 @ rn6
Exon Skipping
Gene
ENSRNOG00000049128 | Nktr
Description
natural killer cell triggering receptor [Source:RGD Symbol;Acc:2321593]
Coordinates
chr8:130381967-130385019:+
Coord C1 exon
chr8:130381967-130382189
Coord A exon
chr8:130383098-130383253
Coord C2 exon
chr8:130384932-130385019
Length
156 bp
Sequences
Splice sites
3' ss Seq
GGTGACTTGATTTATTTTAGTTA
3' ss Score
4.77
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
TTTTTGAGAAAAAAAGGAAGAAACCAACACATTCAGAAGACTCGGACTCTTCTTCCAACTCCTCTTCCTCTTCAGAGTCATCCTCAGAAAGCGAAGTTGAACGAGAGAGAATCAGAAGGAGGAGACATAAGAGGAGGCCAAAAGTCAGACATACTAAAAAGAGACGGAAAGAGATGAGCGGTTCAGAGGAACTGAGAAGGAAGCGCACAGTGAGCCCTGAGGG
Seq A exon
TTACTCTGAGAGGAGTGATGTGAATGAAAAAAGATCAGGTGATTCAAACACTAAAAGAGAAAAGCCCGTTGTTCGACCAGAAGAGATTCCTCCAGTTCCCGAGAACCGATTTTTACTTAGAAGAGATGTGCCTGCCGTCGCTGTGGAGCCTGAACA
Seq C2 exon
GAATGTTCCAGATGTTGCACCTGTTGTAAGTGATCAGAAACCATCTGTATCAAAGTCTGGACGGAAAATCAAGGGAAGAGGAACAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049128-'11-13,'11-12,12-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF105004=SR-25=FE(55.6=100)
A:
PF105004=SR-25=PD(24.1=60.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGACTCTTCTTCCAACTCCT
R:
CCCTTGATTTTCCGTCCAGACT
Band lengths:
257-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]