DreEX0050754 @ danRer10
Exon Skipping
Gene
ENSDARG00000059097 | nktr
Description
natural killer cell triggering receptor [Source:ZFIN;Acc:ZDB-GENE-030131-1725]
Coordinates
chr24:20503715-20504711:-
Coord C1 exon
chr24:20504510-20504711
Coord A exon
chr24:20504042-20504200
Coord C2 exon
chr24:20503715-20503802
Length
159 bp
Sequences
Splice sites
3' ss Seq
CGACTCTTCCTGATTTACAGTCA
3' ss Score
6.08
5' ss Seq
AATGTTAGT
5' ss Score
-1.83
Exon sequences
Seq C1 exon
TTCTTCAAGGCAAACTGAGAAAAGCATTCTATTCTGAGGATGACTCTCAGAGTTCCTCTGAGTCTTTATCTGAGCATTCCTCACTAGAAGAAGAGCCTACATCTCGAAAGAGGAAAAAAAGCTCAAAGAGTAAACATGCAAAGAGAAGCAGAAGAGAGGCAAAGAAGGACAGAGAGACTGTTAAAACTGCAGGACCCGCAAG
Seq A exon
TCATGCTGAGGGCGAGATGGCAGAGGAAAATGATGGTGAAGCTGAACAGAATGTGAAAAGGGAGAAGCCTGTGGTCCGACCAGAAGAGATCCCACCTGTGCCAGAAAACCGTTTCCTGCTCCGCAGAGACATGCCTACCCAGGAGGAGGCAATAAAAAT
Seq C2 exon
TGATGTACAGGACACAGACATTGTACCAAATGACACCAAACCAGCTGTCACAAAATCTGGACGCAAGATCAAAGGCCGCGGAACTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059097-'15-15,'15-14,16-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.853 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGATGACTCTCAGAGTTCCT
R:
GCCTTTGATCTTGCGTCCAGA
Band lengths:
244-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]