BtaEX6093612 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002795 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr22:15394296-15398062:+
Coord C1 exon
chr22:15394296-15394518
Coord A exon
chr22:15394947-15395102
Coord C2 exon
chr22:15397975-15398062
Length
156 bp
Sequences
Splice sites
3' ss Seq
ATTTGATTGTTCTTTCTAAGTCA
3' ss Score
4.49
5' ss Seq
ACCGTAAGG
5' ss Score
6.08
Exon sequences
Seq C1 exon
TTTTTGAGAAAAAAAGGAAGAAGCCAACTCATTCAGAAGTCTCGGATTCCTCTTCCAATTCCTCATCCTCTTCAGAATCATCCTCAGAAAGTGAAATTGAACATGAGAGAAGCAGAAGAAGGAAACATAAGAGGAGACCGAAAGTTAAACATTCTAAAAAGAGACGAAAGGAAGCAAGCAGTTCAGAAGAGCCAAGAAATAAACATATAATAAGCCCAAAAGG
Seq A exon
TCATTCTGAGAGGAGTGATACCAATGAAAAAAGATCTGTTGATTCAAATGCCAAAAGGGAAAAGCCTGTGGTCCGCCCAGAAGAGATTCCTCCAGTGCCCGAGAACCGATTTTTACTGAGAAGAGATATGCCTCTTGTCACAGTGGAGCCTGAACC
Seq C2 exon
GAAAATTCCTGATGTTACACCCACTGTAAGTGACCAGAAACCATCTGTGTCAAAGTCTGGACGGAAGATTAAAGGAAGGGGCACAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002795-'15-13,'15-12,16-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF105004=SR-25=FE(55.6=100)
A:
PF105004=SR-25=PD(22.6=56.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGTCTCGGATTCCTCTTCCA
R:
CCGTCCAGACTTTGACACAGA
Band lengths:
253-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]