MmuEX6069970 @ mm10
Exon Skipping
Gene
ENSMUSG00000032525 | Nktr
Description
natural killer tumor recognition sequence [Source:MGI Symbol;Acc:MGI:97346]
Coordinates
chr9:121742565-121745988:+
Coord C1 exon
chr9:121742565-121742787
Coord A exon
chr9:121743989-121744144
Coord C2 exon
chr9:121745901-121745988
Length
156 bp
Sequences
Splice sites
3' ss Seq
GGTGACTTGATTTATTTTAGTTA
3' ss Score
4.77
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
TTTTTGAGAAAAAAAGGAAGAAACCAACCTGTTCAGAAGGCTCGGACTCTTCTTCCCGTTCCTCTTCCTCTTCAGAGTCCTCCTCAGAGAGTGAAGTTGAGCGAGAGACAATCAGAAGGAGAAGACATAAGAGGAGGCCAAAAGTCAGACATGCTAAAAAGAGACGGAAAGAAATGAGCAGTTCAGAAGAACCGAGGAGGAAGCGCACAGTAAGCCCTGAAGG
Seq A exon
TTATTCTGAGAGGAGTGATGTGAATGAAAAAAGATCAGTTGACTCAAACACTAAAAGAGAAAAGCCTGTTGTCCGCCCAGAAGAGATTCCTCCAGTTCCCGAGAACCGATTTTTACTTAGAAGAGATATGCCTGCTATCACTGTGGAGCCTGAACA
Seq C2 exon
GAACATTCCAGATGTTGCACCTGTTGTAAGTGATCAGAAACCCTCTGTATCAAAGTCTGGACGGAAAATCAAAGGAAGAGGCACGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032525-'34-30,'34-28,38-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.967 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF105004=SR-25=FE(55.2=100)
A:
PF105004=SR-25=PD(23.9=60.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCAGAAGGCTCGGACTCT
R:
CGTCCAGACTTTGATACAGAGGG
Band lengths:
257-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types