GgaEX6018088 @ galGal3
Exon Skipping
Gene
ENSGALG00000005282 | NKTR
Description
NA
Coordinates
chr2:1857555-1859377:+
Coord C1 exon
chr2:1857555-1857777
Coord A exon
chr2:1858051-1858203
Coord C2 exon
chr2:1859290-1859377
Length
153 bp
Sequences
Splice sites
3' ss Seq
TACTTTTTTCCTCTTAGCAGCCT
3' ss Score
6
5' ss Seq
ACCGTAAGG
5' ss Score
6.08
Exon sequences
Seq C1 exon
CTTTGGAGAAGAAGAAGAAAGTCTGTTCTGACTCCGAAGCTTCAGACTCCTCCTCCAGTGGATCAGACCCTTCAGAAACCTCGTCTGAAAGTGAAGCTGAAGATGAAAGAAGCAGAAGAAGAAAGCGTAAAAGAAGAGCTAAAACCAAACAGTCAAGAAAACGGAGGAAGGAAGAGAGGAAGAAAGAGGATCTGAGAAGCAAGCGAGCCTCAAACCAAAGATG
Seq A exon
CCTTTCTGACAAGAGCGATGTAACAGAAAAAGCAGTGGATGTCAGCACAAAGAGGGATAAGCCTGTGGTACGTCCTGAAGAAATTCCTCCAGTGCCTGAAAATAGATTTTTGCTGAGAAGAGATGTGCCTGTTGTCAGTACAGAACCTGAACC
Seq C2 exon
GAAGCTCCTTGATGCTACTCCAGTTCTAACTGACCAGAAACCATCAGTGTCTAAATCTGGACGAAAAATTAAAGGAAGAGGCACCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005282-'10-16,'10-15,12-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.960 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGAAGCTTCAGACTCCTCC
R:
GACACTGATGGTTTCTGGTCAGT
Band lengths:
242-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]