GgaEX0007290 @ galGal3
Exon Skipping
Gene
ENSGALG00000005282 | NKTR
Description
NA
Coordinates
chr2:1846027-1855522:+
Coord C1 exon
chr2:1846027-1846114
Coord A exon
chr2:1852991-1853018
Coord C2 exon
chr2:1855493-1855522
Length
28 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTGTAAAATTTACAGAAA
3' ss Score
6.05
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
ATGAAAACTTTATTCTCAAACATGACAGAGCGTTCCTTTTGTCAATGGCAAACCGAGGGAAACATACCAATGGTTCCCAATTTTTCAT
Seq A exon
AAACAGTGTTACATCGTGCGCTCCAAAG
Seq C2 exon
AACAACAAAACCCGCTCCTCATCTTGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005282_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.022 A=0.000 C2=0.167
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(17.5=100)
A:
PF0016016=Pro_isomerase=FE(6.9=100)
C2:
PF0016016=Pro_isomerase=PD(3.1=44.4)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTATTCTCAAACATGACAGAGCG
R:
CCATCAAGATGAGGAGCGGGT
Band lengths:
112-140
Functional annotations
There are 0 annotated functions for this event