HsaINT0184662 @ hg19
Intron Retention
Gene
ENSG00000114853 | ZBTB47
Description
zinc finger and BTB domain containing 47 [Source:HGNC Symbol;Acc:26955]
Coordinates
chr3:42695176-42701320:+
Coord C1 exon
chr3:42695176-42695375
Coord A exon
chr3:42695376-42699766
Coord C2 exon
chr3:42699767-42701320
Length
4391 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TGTGCCCTCTGTCCCCGCAGTTG
3' ss Score
12.73
Exon sequences
Seq C1 exon
GAGCAAGGGGGCCACTCAGCAGTGGTCAGGTCACACGGCTAGAGGGGCACAGTGGGGCCTGGGCCTCTGGTCCCTACTCCTCTGGTCCCTCTGTCTCCTGGCCCTGGGCCAGTCACCTTAGATGATTTGATCGCTGCGGTTGTAGTCCTGGGATTTAAATCTCCTGCCCTGGGTGGCCCTATGCAGCATGAGGCCGCCAG
Seq A exon
GTAGGTATGGGTCCACTGGAGCCAAGTCCTGGAGGCACAGAGCAAAATGAGCCCTGCGCCGCCCTGGGATAGGGATGGGGGACTGGACCAGTTGGGGACCCCAGACTCACCCCCAGGTCAGAGCAGCCCAGGCGAGAGGGTGGGGGTGGTGAGCGCGGCTGGGGTGCGGGGTTCAGTCCCTCAGCGTGGGATCCCTCAGGGGAGCGGGTGGAAGCCTTTTCTGTTCGGATCCGGGGCCCGGCGCGCTCAGCTTCCTGATTTCACGGCAGCTTCCTATCCTGGCTCCCCCTCCGTGGCGCAACCGGAGGGCAGCGATGTTTGACTCCCGGACGAACTTCCCGGCAGAAAGGAGGCTCAGCACGGGAGGGTGGGGCCGGGGTCTATCTGCTCGGATATGAGCAGTGGGGACGGGCTGGGGGCTGGAGCTGGGGCTGGGGGTGGAGGGCAGCCTGCGGCAGGGCGGGCTGCACGGGGACCGCGCACACCACGCGTGTCCGCGCCCCCCGCCGGCACGCAGGCGGCCTGGCCCTTTAAGCGTCCAGACGGCGGCCCCAGCTGACGCGCGGGCTCCAATCGGCGCCCCGCGCCCCCCGCCCGCCGCGCCCGAGGCTCTGGGGCCGCAGCTGCTTGGCGCTGGACTCGCCGCGGCCCTGCGCCTCCGCCTGCCTGGCCGCGCCCCCGGGGGCCATGGTCGCGGGGCCCTGCGCGGGGGCGGCCCCCAGCGCGGCGCTTCATGGAGCGGCCCTGGCCTGGCCGCCGGGGGCAGCGCGATCCCGCGGGGCCCTGTGAGCCCCCAGCGCCACGGCACCATGGTACGCAGGGCCCTGCCTGTCCCCCCGCTTATCCGCCCACCTGCCAGCTCTGACCTCCCAGGCACACGGCCCGCGGGCCCGGGTGGAGGGGCTGGAGGGATCTTCCCCCCTCCCCCGGTCTCCCGGCTCCATCTGCTGGGTCCCGCGGGCCGGGAATGCGGCGCTGTGGCGCTGCTCTCGGTGGGGAGGGGGTTAAATTCCTGTGGTGGGGGCGCCGGCGCGCGAGGCTGAGGTCTTGCTAGGCACCGGCGAAGGGGGGCGCTCCCCTGCGCCCGGACGGCGCCGCCCTCGGGCTGGGTAATGGGGGGAAGAGGGAGTCGGATTCCCGCCTGGGCCTTGGGCCACGTGGGCGCTGGAGCCGCCCTGCCTGGGGATTCGGGATGACCCGGGCCAAGGGGGTGTGGGAGGACACCCAGAGCTCCCGTACCAACTCCTGTGTGACCTTGGGCAGATCCCCCGCCCTCTCTGGGTCTATTTCCAAGGGAAAGAGGGGAGGTAAGTGCACAGAGGAGGCTGGCATGGACACTCCCTCACCAAAAGGAGGAGCCTAGAGGTCATGAGCCTGTGCCCCCTTGCTCAGTCTGGGCCCCCCCACTGCTGCCCAGCATAGAAAGAATTGACATGGGAGGGGGGCGCAGATGGACTCCCCAGGTTTCATCATGGGGCCTTCCAGGGAGGCTCTGAGGCAGGGTAGAGAGATGAGGCTTCTCATCAGTGAGGCAAGGTACCCCTCAGGTGTAGAAGGCTCTGACTTGGGTGAGCAGCCTGGAGAGATGTCTGGCACCTGGCCAATCCCCAGCCTGACTTGGGGCAAGGGTTTGAGGGCATGAAACCCCCTGGCAACCAGAGTGCCTGACCACCTCCCTGGTCCTGCATCTTAGCTAGGCTGGAGTGACCTGGACTGCAGCTGGCACAGCCGGATGGGGAGGGGCACGCATTGCTTCCGGGAACCAGCACATCTGGCTGTGGAGGCCAGCACAGCTGGTGGGCATTGTGTGGGAGGGGCCAGACATGGGGGTGGCTGAACCCTGCTGAGGGGCTGCCAATTGTGGACTCGGGCAGCATCTCTGTGCCCAGTCAAGAGAGTCCAATCAGGTCATGAGGTTTAGGGCCCCCCAAGGGCCAAGGATGGTGCTGCCTTGGCTGAGAGTACTACCTTAGCAATGGAGTGTTTGAGAAAGCACTCCCCTCCTTTCCTGCTGAGAGGCCAGAGGGCCAAAGTCAGGCCTCATTTGGCCTAGAGGCCAAAGTGCACATGGGAAGGTTGCCCTTTCCCTGTGGCAGGTGGGCACAGGTGGGCAGTGGAGGGCATTCCATAAAGGGAGAGCAGAGAGATCTGGGGCTCTGTTGCCTGGGGTGGACTTCCCCCAACAGGCCTGGCTTCAGCAAACCCTTATCCAAGCCACTTCTCCTGCCAGTCTTTGGCCCCTGGAGGCCCTAAGGAGCCCCTGTTGCAACCCAAGTTGTACCCTGATCCTTCACTGACCTGCAGGTGCAGTGGCTCTAGGGAGGAGGGAGCAGGTAGAGGGGATAGTGGTGAGTGTGGGGAAGCACGGCTGGTCTCCAGGTGGCGGGATGTTCTCGCTTTTTAAGTCATTAAAGGCTCAGAAATCCAGCCATGTGGGGTCTAGCAAGGAAGGGGTGGTCTTAGCGGAGCTGGGAGTCCAGGGGCTCTGGACTGTGGAACCCTCTCATTCTGAGCCTCGGTTTCTCCATCTGTGTAGTAGGGGTTGGTCCCAGAAGATGAATCAGAATGAGTCAGAGGAGGGAGATGGGAGGGGCTTGGTGCCACGTCCCAGTTAGATTGGCCAGGCCTGGACAGCCTGGGACAGAGGGAGATGGATGGCTTCTTGGCTGGGGTAAGGGGTGTAGTGGAGAACTCAAGGAAGATGGTAGCCTTGGCCAGGGGCCTGGCCAGACTGGGATGTGAGGGAACACAGGATGGCTGCTGCCCTGGCTGCTGGGTGTAGGGGGCAGGGTCCAGGGCAGGCCTGGAGACAGGTGGCCCCTGGTGGCTCAGGGAGGCTCCTGCTGAGGCCCACGGTAGGTTTCTCATTCAGGTGACTGAGAAGTGGAGCTCAACCACCACCACCCCTGCCCAATCCCAGCCTACCCACTGCTCTCCTGGCGATGGAAGGCCTGGCATGGGGAAGGGGGGCGGTAGGCTGTGGATGGATGGGGCCAGGATTCATCCCAGGGTCCCCAGGGAGGCACTGACAGCTATGGAGCTGATGGTTTTGTGGCCATCAAAATATTGTGGCAAGGTACCTCCCGAATGCAGGAGGCTCAGACCTGGTTGGGCAGGCCCTGAGGAGAGCCAGAACTTGGAACCAGTGGTGCTGGTCCAGCTGGGCTGGTGGTTGGTGGATATTAACAACATCTGCACATCACTGTGTGATGGTTCTCGTGCAGGGACTGGGCAGGCTGCCTGTCTGTGCTGCCCACCTTTTGGGGAGGCTGCTGTGGTAGAGCCGGGGTGACTGAGTTGGCTTCTATTCCAGGCAATTCACAGGTGCTGGATGTGGCCCACAGGCCTGATAGTCTGACCCATCAGACATTGAGGGCCTCCGCTAGGGCTCTGGAAGCCCCAGATGGTGTGGCCTCTAAGGCAGGGCTTTCCCAGAGCCTGTGGACATGGACCGTACCTGACCTGGGGTCTGGGGGTCTACCGGGAAAAGGATCTGGGGCAGGCCTTGGGGGCCTCCTGCCTGCAAGCATGGTAGGCAGGTTCCACAGCTGTGTCCTTCCACCCCTGCAGAGCCCCTGAGTGAGAGAGAGCTGCTGGGGGCTAGGCCTGAGGCTGCAGGCAGGGGTTGGGGGCAGCCTGGCCCAAGCCCTGGCTGTGATGAGGAGACCTCACCAGGCAGTGCAGCAGGACCAGAGTGGGGAGAAGGTATAGGCCCTGAGCCTGGATTTCTTCACAGGTTTCAACTTCTGCAGCAGCCACATGGCTGTTGCGATGAGGGGTTCCCTCAGGTGCTACCCCTTGGATTCTGTAGCCAGAGACTGGGCAGTGAGCAGTGAGCCCGGCTTCTGTTCTTGAGGTGTTTGGGGCTGGGCAAGCTTGCTTTTATTGGTATGTGTGAGTGAATATGTGGAGAGAATCCACGGGGCTGAGGAAATGCTGAAGGAATGCCTGTGGCCCTCCTGGGGTGACCACCTGGTCCCGGTGTGCCTGCGATGGTCCTGGTTCTAGCACTGAAAGCCCTGCACCCCAGAAAATGCCCAGGTCCCTGGCAAACCTGGATGGTTGGTCACTGTGGTCTCTCTTTCATCCCCTTTCCTTCCCTTTCCCTTCCTGGGATGACTTTTCCCATTTCCCAGGAGATGACCCAGAGGCCCAGAAAGTGACAGGACCTGATCTTCAGCCTCAGAGGGTCACGAGTGGAGCCTGAGCTCTGAGGCAGCTCACTCAGGCTTGAATCCCTTCCTTGCTAGTTTCGGCTCTGTTGCTGTAAAGTGGAGCCACGAGTGATGGGCTGCCTCCTGGATGGCTGGCAATGCTGGGAGTGGTGCTGGGGGAAGGGCGGGCAGGGGCCCACTGGCCTTGACCCACTCCTGTGCCCTCTGTCCCCGCAG
Seq C2 exon
TTGCTGGTTGAGAAGACAACTGACTCCCCGGCGGCTGAGTTCTCGCTGGTGGAGGACGTGGCGCTGCACTTTGCCTGCTTGATGGGCCGCCTGAACGAGCAGCGCCTCTTCCAGCCTGACCTCTGCGACGTGGACTTGGTGCTGGTGCCCCAGCGCAGCGTCTTTCCGGCACACAAGGGTGTGCTAGCCGCCTACAGCCAGTTCTTCCACTCACTCTTCACCCAGAACAAGCAGCTGCAGCGTGTGGAGCTGTCCCTGGAGGCACTGGCACCTGGTGGCCTGCAGCAGATCCTCAACTTCATCTATACGTCCAAGCTGCTGGTCAACGCGGCCAACGTCCACGAGGTGCTCAGCGCCGCCTCATTGCTGCAGATGGCTGACATCGCTGCGTCCTGCCAAGAGCTGCTGGACGCCCGCTCTCTAGGCCCACCAGGTCCGGGCACTGTGGCCCTGGCCCAGCCGGCTGCCAGCTGCACTCCAGCTGCGCCGCCCTACTACTGTGACATCAAGCAGGAGGCCGACACCCCAGGCCTGCCCAAGATCTATGCCCGCGAGGGCCCTGACCCTTACTCGGTGCGTGTTGAGGACGGGGCAGGGACTGCTGGTGGCACAGTGCCTGCCACCATTGGGCCAGCCCAGCCCTTCTTTAAGGAGGAGAAGGAGGGTGGTGTCGAGGAGGCCGGTGGGCCCCCAGCCAGCTTGTGCAAGCTGGAGGGTGGAGAAGAGTTGGAGGAAGAGCTTGGGGGTTCTGGCACCTACAGCCGCAGGGAGCAATCCCAGATCATCGTGGAGGTGAACCTCAACAACCAGACACTGCACGTGTCCACGGGGCCAGAGGGGAAGCCAGGTGCCGGGCCAAGCCCAGCCACCGTGGTTCTGGGCCGGGAGGACGGGCTGCAGAGACACTCGGACGAGGAGGAGGAGGACGACGAGGAGGAGGAGGAGGAAGAAGAGGAAGAGGAAGGTGGTGGCAGTGGACGGGAGGAGGAGGAGGAGGAAGAGGGTGGCAGTCAGGGAGAAGAGGAAGAAGAGGAGGAGGACGGGCACAGTGAGCAGGAAGAGGAAGAGGAGGAGGAAGAGGAGGAAGGGCCTAGTGAGCAGGATCAAGAGAGCTCTGAGGAGGAGGAGGGGGAGGAGGGGGAGGCTGGGGGCAAGCAGGGGCCACGGGGAAGCCGAAGCAGCCGGGCAGACCCCCCTCCCCACAGTCACATGGCCACACGGTCCCGGGAGAACGCCCGGCGCCGGGGTACCCCTGAACCTGAAGAAGCTGGGCGGCGGGGTGGGAAGAGGCCAAAGCCACCCCCTGGAGTGGCCTCTGCATCGGCCCGAGGGCCGCCAGCCACTGATGGGCTGGGGGCCAAGGTGAAGCTGGAGGAGAAGCAGCACCATCCATGCCAGAAGTGCCCACGAGTTTTCAACAACCGCTGGTACCTGGAGAAACACATGAATGTGACCCACAGCCGCATGCAGATCTGCGACCAGTGCGGCAAGCGCTTCCTGCTGGAGAGCGAGCTGCTGCTGCACAGGCAGACAGACTGCGAGCGCAACATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114853-ZBTB47:NM_145166:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.563
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=WD(100=22.4),PF155111=CENP-T=WD(100=53.6),PF138941=zf-C2H2_4=WD(100=4.9),PF0009621=zf-C2H2=PU(4.2=0.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)