MmuINT0179647 @ mm9
Intron Retention
Gene
ENSMUSG00000013419 | Zfp651
Description
zinc finger protein 651 [Source:MGI Symbol;Acc:MGI:2670992]
Coordinates
chr9:121669151-121673239:+
Coord C1 exon
chr9:121669151-121669343
Coord A exon
chr9:121669344-121671736
Coord C2 exon
chr9:121671737-121673239
Length
2393 bp
Sequences
Splice sites
5' ss Seq
ATGGTACGC
5' ss Score
8.57
3' ss Seq
CCTGTCTCTTGGCCCCACAGTTG
3' ss Score
9.92
Exon sequences
Seq C1 exon
AGCTGCTCGGCCGGGACTTGCCGCGGCCCTGCGCCTCCGCCCGCCCGGCCGGCCGCGCCCCCGGGGCCATGGTCGCGGGGCCCTGCGCAGGGGCGGCCCCCAGCGCGGCGCTTCATGGAGCGGCCCGGGCCCGGCCCTCGGGGGCAGCGCGATCCTGCGGGGCCCTGTGAGCTCCCAGCGCCGCGGCACCATG
Seq A exon
GTACGCAGGGCCCTGCCTGTCCCCCCGCTTATCCGCCCACCTGCGAGCGCCTCCTTTCAGAGCGCACGGCCCCTTGGGACCCGGTGCAGGGTCTGGAAGACCTGGCCCCTCCCCCGGGGTCCTCGACCCTATCTGTCCGGTGTGCAGGGCCCAGAGTGCGGCGCGGCGGCGCGGCTCAGGGGTGAAATTCCTGGGGTGGGGGGTGCAAACGCGAAAGGCCGAGGTCTTGCTGCGCACGGGCGGAGGGGGGAGCTTCTCTGCGTCCGGACGGCGCCGCCCCGGGGCTGGTAATGGGGGGAAAAGGGGGAGTCGGATTCCCGCCCGGGCCTTGGGCCACGTGGGCGCTGCAGCCGCTCTGCCGGAGACTAGGATGGATCGCTCCATAGGCGGGGGGCGCCCACAGCTGGAGTGGAAACTCCTGTGTGACCTTGGGCCGGTCCCCTGCCGTCTCTGAGCCTGTTTCCCAGGCCTCTCCAAAGAAAGCATCCAGAAGTCATGAGCCTGTACCCCTGCCGCCGGGGTTTCACCAGATGGCCTTTGGGAGGCAAAAGCTTGGTGGCCTCTGCAGGTGTCCCTCTGGGGGAGGGCTGCGATGCAGCTGGTGTACCCAGGTGTTGAGAAGCCTCCTCAGCTTCAAGGAGCCGGAAGCATCTGGCCAGAGGCTACACAGCTGGTGGGCACTGATCCGGAAGGGGCCCTGCCACTGGCTGGCAGCATCTCTGGTCCATGGCTGGGGAGGCTGCAATGTGACTTTAGGGATGCCTGGGTTTCTGCCAGGCTCAAGTGGCCCTGCCCAAGCAGGAGGTCCCTGGGGAAGCTTTGTAAAGGGAAAAACGGGGACCCCAAGCCTGGAATAAGTGGTGCCATGGGGGGGCCTTTCCCTGCCACCGTCCACCCCCCAGTAGTACAGACACCAGGACCTGCAGGTGCAATGACTGGGAAGGAGGCAGGACCAGAGGGTGTGGTGACTGTGTCTGGATGCTTAGGTGGTTCTCACACCTCATGCTTCCACCCACCTCACTTCCAGGACTCTCCAACTGCCTGTCTGAAGTGTACCAGGCAGAAGGGAAGGGTGCTGGAGTGGCAGGATGGCCACAGCTCCATGAGTAAAGCCTCTCTGGGCCTCAGTTTCTCTAAGAAAGAGGAATTGGTCCCAGAAAATGAATCAGAGTGAGTCAGAGAGGGATGGGCGGGGCCCCGTGCCACGTCCCTGCTGGACGGCCCAGCAGTTCTGGGATAGATTCAAGAATGGGTGGCTGGTGGGGGTGTGAGGGGTGGAGGGAGCTTCAGGAAGGCAACGTCTGTTGGTGGAGCGGAGGGCAAAGAGTGGGCATGTCTTGGGCTGCTGGCCGAGGGCACAGGTTCGAAGCTCCTTGGGGCTCACCCGCAGCTTCTCCTTTAGCAGAATGACAAGGGAGCTCAGAGTCCATGCTCTCTGTCTGGCCCACCCACTGCTGACAGGAGAGAGGACTTAGAGGGGACAGCTTCATCCTGGGACCCCTAAGGAAGGTGGGGTTGTGTCCCCCATTGGGATGCATCGGCATTCACACACTGGAAGCTTTCGTCTCCACAGGCAGAGCCCATGGAGCATCCAAAGCCAGCCGTTGTAGGGCCGGACTGGCCAGTGTCTGCTGAGCCCCAGGCCCTATGTGAGGGATAAGACAGGCCCATCTCTACCACCCGACTAAACAGGACTGTTCTGGGAGTGGGGCAGGGCCTAAAGGCCTGGCAGTCTGATCTGTCAGTCACTAAGGTCCCTAGGGGGCTCTCCAGGAGGTGCGACCTCCAAGACAGGACCAGCCTGGAGCTTCTGCGTCTGGGCTGGGGTGCCGGAGTGTGGCAAACAGAGAAAACAGCCCGTCTTCCCCCAGGACCCTGTGTACAAAAAGCTGCTGTAGCTTGAGTGGGCCTGGCTGTCTTTAGCCTGCTGTCTTCTGTGGCCCCTTAAAGGCCTTTGTTGGCCACTGTCCAAGTGAAACGGCCCCTGGATGCTACAGCCTAGGTGCAATAGCGGAAGCTGTGTCTTCTGCTGTTCACGTGCTCACAGTTGGGCAGGCTCCTGTCTCAGCATGGTGGGAAGGTCAGGACGGACTGAGGCATAGCTGGAAGTCCAGTTGGGGCACAGTGAAGAGGGATCCTGGGGTGGCCCCTAGTGTGTGCACAGAGGAAGAGCGAAGGGAGTGCCCAGAGCAGCTACCTGGGCACAGGTCCCAGGACATCGTAGCCCTAGCAGCAGCTGTCCCTGCCCTGCGTGCCCGTGCGCACGTCTGTGCGTCTGTCCTTCCCCCAGCTTGATGGATGGATCAGATCATTTCTGGTGGTGGCACCTCCCACATTGTGGGCAGGGGTGGGCAGTGGTTGGCCCTCACCTCTCCTGTCTCTTGGCCCCACAG
Seq C2 exon
TTGCTGGTTGAGAAGACGACAGACTCCCCGGCGGCAGAGTTCTCGCTGGTGGAGGACGTGGCCCTGCACTTCGCCTGCTTGATGGGCCGCCTCAATGAGCAGCGCCTCTTCCAGCCAGACCTGTGCGATGTGGACCTAGTGCTGGTGCCTCAGCATAGCGTGTTCCCCGCACACAAGGGTGTGCTGGCCGCCTACAGCCAGTTCTTCCACTCGCTCTTCACACAGAACAAGCAGCTGCAGCGGGTCGAGCTATCTCTGGAGGCACTCGCGCCCAGCGGCCTGCAGCAGATCCTCAACTTCATCTACACGTCCAAGCTGCTCGTGAACGCGGCCAACGTGCACGAGGTGCTCAGCGCGGCCTCGCTGCTGCAGATGGCTGACATCGCGGCCTCCTGCCAGGAGCTGCTGGACGCTCGATCCTTGGCGCCCTCGGGCCCTGTGGCCCTGGCACAGCCTGCCACCAGCTGTGCTCCGGTGCCTCCACCACCCTACTACTGTGACATCAAGCAGGAGGCAGATGCCCCAGGCCTCCCAAAGATCTATGCCCGGGAGGGCCCCGATCCCTACTCTGTGCGTGTGGAGGATGGAGCAGGGGCTGCTGGGGATGTAGGCTCTGCCACTGCTGGGCCAGCACAGACACTCTTCAAGGAGGAGAAGGAAGGGGCCCCTGAAGAGGCAGAGGCCCCAGGTAGCCTGTGCAAACTGGAAAGTGGAGAGGGGCTGGAGCCAGAACTGGATGCCTCGGGCACCTATGGGCACCAGGAGCAGTCACAAATCATTGTTGAGGTGAACCTTAACAACCAAACACTGCATGTGTCCACCGGACCCGAGGGCAAGCCAGGCTCTGGTGCCAATCCAGCCACTGTGGTGCTCGGCCAGGAGGATGGCATGCAGGGACACTCGGAAGAAGAGGAGGAGGAAGGAGGAGGGAGTGGAGGGGGAGAGGAAGAGGAGGAAGAGGAAGAAGAAGAGGAAGGCAGCCAGGGAGAGGAGGAGGAGGAAGAGGAGGAAGGGCCCAGCGATCATCGAGAGGATGAGGATGAAGAAGATGGGCCCAGTGAGCAGGATGCAGAGAGTTCTGAGGAGGAGAGGGAGGCTGAGGGCAGGCAGGACCCCGCAGGTCCCGCTGGGTGTCAGGGCAGCCAGGTGGACCCTCCACCACATAGCCGAATGTCCACACGGTCCCGGGGACAGAACACCCGGCGCCGGGCCACCCCTGAGCCAGAGGAGGCTGGACGTAGAGGTGGGAAGAGGCCCAAGGCCTCTGGAGCTGTTCCGGCATCCCAGGCAGCTGACGGGCTGGGGGCCAAGGTGAAGCTGGAGGAAAAACAGCAGCATCCGTGCCAGAAGTGCCCTCGGGTCTTCAACAACCGCTGGTACCTAGAAAAGCATATGAACGTGACCCACAGCCGGATGCAGATCTGTGGCCAGTGTGGGAAGCGCTTCCTGCTGGAGAGTGAGCTGCAGCTGCACAGACAGACGGACTGTGAGCGCAACATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013419-Zfp651:NM_001166644:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.545
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0065126=BTB=WD(100=22.0),PF057937=TFIIF_alpha=WD(100=36.9),PF0334410=Daxx=PU(99.1=46.3),PF041477=Nop14=WD(100=29.1),PF138941=zf-C2H2_4=WD(100=4.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: