MmuEX0032540 @ mm10
Exon Skipping
Gene
ENSMUSG00000035513 | Ntng2
Description
netrin G2 [Source:MGI Symbol;Acc:MGI:2159341]
Coordinates
chr2:29196982-29204924:-
Coord C1 exon
chr2:29204898-29204924
Coord A exon
chr2:29203871-29204008
Coord C2 exon
chr2:29196982-29197149
Length
138 bp
Sequences
Splice sites
3' ss Seq
CCTTCTCCATGTCTTGCCAGGTA
3' ss Score
10.07
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTGCGGCCGCGGGCTCCGCCTTTGGCA
Seq A exon
GTACCAGCAGGTCCAGAAAAAATCCTGCCCCCAAAGCCCCTATGGCCACTGAGGCCACATGGAGGGGCCCTATCACTTCTATCCCCTCCACGTCTACCATCCAAGTCCCTACAGCCCCAAGCACCCCACAGCCAACAG
Seq C2 exon
ACTGCGAGTGCTACGGCCACTCCAACCGTTGCAGCTACATTGACTTCCTGAACGTGGTGACCTGCGTCAGCTGTAAACACAACACTCGAGGCCAACACTGTCAGCACTGCCGCCTGGGCTACTATCGCAATGGCTCCGCAGAGCTGGATGATGAGAACGTCTGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035513_MULTIEX1-6/9=5-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.702 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(0.1=0.0)
A:
NA
C2:
PF0005319=Laminin_EGF=WD(100=94.7)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types