HsaEX1026288 @ hg38
Exon Skipping
Gene
ENSG00000196358 | NTNG2
Description
netrin G2 [Source:HGNC Symbol;Acc:HGNC:14288]
Coordinates
chr9:132231276-132235751:+
Coord C1 exon
chr9:132231276-132231568
Coord A exon
chr9:132231643-132231789
Coord C2 exon
chr9:132235651-132235751
Length
147 bp
Sequences
Splice sites
3' ss Seq
CTTTTCCCATCTCTCACCAGGCA
3' ss Score
11.62
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCACGGTCTCTCCTTTCAGCCTTGCAAACCCCTCCCCCTGGGAGGTCGCCATCTGCTCTGCGAGGCAGCAGGAGAGGACTGGCCAATGTCAAAGAGCCAGCCGGGAGCAGACCCCAAATCTCAGAGATGCTTCTGGGGTGCACCGTCACCCTCCACCAGGGCTCTGTGGGGCCCCACATCCCACCCAAGTTGTCCCTCCCGGACCCAGGGGGCCCCTGGCTGGGAAGCCAGTGAGCCGAGAGGGCGCCAGAAAGAAGCTGGACCCTGCAGGGACGCTGGTCTGCACAGCCGTC
Seq A exon
GCATCAGCAGGTCCCAGAAAGACCCCGACCCCAAAGGCCCTGTGGCCACTGCGGCCACCACAGCCATGACAGGGGCCCCTACTACTCCTGTCCCCTCCACGTCCACTGCCTGGGCCCCCATGGCGCCCAGCACCCCACAGCCCACAG
Seq C2 exon
AGTGGACCAGGCCATCTACGGCTGCCCCTCTCTCGAGCAGGTGGTCCCAGGTGGCCTCCCGTGCAGAAGGTATGGGGGGGCAAGGCCTGTGATGGGCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196358-'28-20,'28-19,29-20
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.704 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGAGGACTGGCCAATGTC
R:
CGTAGATGGCCTGGTCCACT
Band lengths:
244-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains