HsaEX1026289 @ hg38
Exon Skipping
Gene
ENSG00000196358 | NTNG2
Description
netrin G2 [Source:HGNC Symbol;Acc:HGNC:14288]
Coordinates
chr9:132231689-132237316:+
Coord C1 exon
chr9:132231689-132231789
Coord A exon
chr9:132235651-132235719
Coord C2 exon
chr9:132237216-132237316
Length
69 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTTCTTCCCCCCAAGAGT
3' ss Score
6.89
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
CACTGCGGCCACCACAGCCATGACAGGGGCCCCTACTACTCCTGTCCCCTCCACGTCCACTGCCTGGGCCCCCATGGCGCCCAGCACCCCACAGCCCACAG
Seq A exon
AGTGGACCAGGCCATCTACGGCTGCCCCTCTCTCGAGCAGGTGGTCCCAGGTGGCCTCCCGTGCAGAAG
Seq C2 exon
GAAGGGGCCCCACCTCCCTGGGCTCTTCGAGGAGAGGGGCTGTGTGATTTGAGGCCAGAGGGGCCTCTCCCTCCCTCACATCTGAGCAGGCGACAAGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196358-'29-21,'29-20,31-21
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGACAGGGGCCCCTACTAC
R:
CAGATGTGAGGGAGGGAGAGG
Band lengths:
167-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains