RnoEX0061353 @ rn6
Exon Skipping
Gene
ENSRNOG00000013694 | Ntng2
Description
netrin G2 [Source:RGD Symbol;Acc:1307089]
Coordinates
chr3:7744982-7751881:-
Coord C1 exon
chr3:7751744-7751881
Coord A exon
chr3:7748590-7748664
Coord C2 exon
chr3:7744982-7745149
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTTCTTCCTCCCAAGGTC
3' ss Score
10.58
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTACCAGCAGGTCCAGAAAAATCCCTGCTCCCAAAGCCCCTATGGCCACTGAGGCCACAAGGAGGGGCCCAGTCACTTCTATTCCCTCCACATCTACCATCCAAGTCCCTACAGCCCCAAGCACCCCGCACCCCACAG
Seq A exon
GTCAGACCAAACCAACTACTGTGGCACCCCTTGGGGACAGCTCCTTCTGGCCCCAGGTGTCTTCCAGTGCAGAAG
Seq C2 exon
ACTGTGAGTGCTACGGGCACTCCAACCGCTGCAGCTACATTGACTTCCTGAACGTGGTGACCTGTGTCAGCTGCAAACACAACACTCGAGGCCAGCACTGTCAGCACTGCCGCCTGGGTTACTATCGCAACGGCTCTGCCGAGCTGGATGACGAGAACGTCTGCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013694_MULTIEX1-3/4=2-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.745 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005319=Laminin_EGF=WD(100=94.7)
Main Inclusion Isoform:
ENSRNOT00000082489fB9926
Main Skipping Isoform:
ENSRNOT00000082489fB9925
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGGCCCAGTCACTTCTAT
R:
CTGGCCTCGAGTGTTGTGTTT
Band lengths:
172-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]