RnoINT0103728 @ rn6
Intron Retention
Gene
ENSRNOG00000013694 | Ntng2
Description
netrin G2 [Source:RGD Symbol;Acc:1307089]
Coordinates
chr3:7744982-7746899:-
Coord C1 exon
chr3:7746798-7746899
Coord A exon
chr3:7745150-7746797
Coord C2 exon
chr3:7744982-7745149
Length
1648 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CTCCTACTCGGCTGGTCCAGACT
3' ss Score
2.65
Exon sequences
Seq C1 exon
CTGTGACTATCCCTGTCGCCATCCCTTCCCAAGCCAAGGACTCTACACTTTTCCAGCTCAAGCCCAGATCTCCTCAGGTGATACCCATTGAAGAGTTTCAAG
Seq A exon
GTAAGAAGACGGCCTGAGTCAGGCCTCCCACCTCCTCCCCAGGTCCCTGGAGAAAGACGGTGCAGGGCAGACCTAGCTAGTAGGAACCAACTCAGAAAAGCCTCCCAGAATAGCTGGGTCAAGGTTAAGCCGAGTCTCTCCAGCCCCAAGGGAGCTAAAAGCTGGGATGAGTCAGAAGGCAACTCAGGCACAGTGGGCAGGCACATGGCAGGAGAAGCAGCTGCCACAAATAGCCTGTCCTGGCTCCCCTGGGAGGTGTGGCCCAGGGGCTTGTCTTGGTTGGAATGGAATCTGGGACACCCAGGTCACTGGCAAGGCTCTTTGGGAGGATTTGGAGGATGCTTCCTGGCATCTTTGGAAGGCCAAGGTAAAGAAAGAGTCAGGTCAAGTAGAGCCATGAGTGGCTCTACCAGCTTCTCTTAGATGTGTCACAAAGATTTCTTCAGGCTCTCTTGTGCATTGACAATATGGAGACCAGGTCAGCACCACCCTGCTCATCACAAGAAAGGGAGCTGAAGCCTTCTAGGGATAGTTGCTCCAAGGGTGGCCAGCTTTCATGTCCAATGGCATGGGGCTACGGAGTCCCTTGATGGCCCATCCTGCTGAAGGAAAAGTGGCCCTCCACATTGACCTCTGCTACTCCAGATCCTAGGATCCTTGGCCTAGGCAGTCATGGAGTTGATAGAGTTGTTTGGAAGGTCAGCCTGAGAACCTCGAGTGGCAGGTTGAATATGTGGTGTGGTTGGTAAAGTGCTTGCCTAGCACACAGGAAGGAAGTCTGCACTAGAGTCTCAGCACAGCATTAACTGGGTGTGGACTTGCATGACTATAATTCCAGGAGGCGGAGATTGGAAGACCAGAAGTTCAAGGTCATTCTTGGCTAACTCTTGAGTCCAAGGTCAGCCTGAGCTACCTGAAACCTCCTTGGGTTTGTCTTAAAACAACAAAACCAAAATCATTTGTGGGATAGAAAGAGTAAAAGCTCCCACAATGGCTCAGAGGTGGTTTTCCTTGGTATAAACTGAACGGTGAGATTCAGAAGCTGGGCTGAGGCCAGAGGAAGCCAGGAGATTGGTGCCCTGAGTCTCGCCGAAACTAGCAATTCAATGCCAGTCAAACTCGTGGGACATTCAGGCCAGTGACTTGCAGAGACAGTAGCCAGCTTTCCTCTTCCAAAGCAGCATGGGAGGAAGGTTCTTTGTCCCATTTCATCATGTCCACATCATGTCCACATCCATGTGTGACTCCTCCATCCATAGGCCCTGAGGGGACTAGAGCAAGCATGGAACCTTTGCACTGCCCTTCCGTGAATGCAGCCTACAGCATGACCCTGCCCTCCTAATCAGCCCCAGCATGTGGGCATCCTTCACACAGCACCTTGCCCTAAGACCCAGTCAGACTTTAGCATTCCCCGGCTTCCCTGACTATCTTCCCACAGGCCTCCTGGGGACTCAAAGGTTGCAGGGCGAGCTCTATCCACATGCTACAGAAGTGTCCCTGACCTGAAACCCCTTCCAGATCCCCCTCCAAAGATGCTTCCTGTCACCCTCCCTGTATATCCTTGGCTATGTCCTTCTCTGTATCCCTGTTCCCCCAACTCCCCCAATGCTCCCTGACCACTGCTGTTTCTCCTACTCGGCTGGTCCAG
Seq C2 exon
ACTGTGAGTGCTACGGGCACTCCAACCGCTGCAGCTACATTGACTTCCTGAACGTGGTGACCTGTGTCAGCTGCAAACACAACACTCGAGGCCAGCACTGTCAGCACTGCCGCCTGGGTTACTATCGCAACGGCTCTGCCGAGCTGGATGACGAGAACGTCTGCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013694:ENSRNOT00000045919:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005319=Laminin_EGF=WD(100=94.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGACTATCCCTGTCGCCAT
R:
CGTTCTCGTCATCCAGCTCG
Band lengths:
260-1908
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]