GgaINT1020058 @ galGal4
Intron Retention
Gene
ENSGALG00000003677 | NTNG2
Description
netrin G2 [Source:HGNC Symbol;Acc:HGNC:14288]
Coordinates
chr17:6471820-6481738:+
Coord C1 exon
chr17:6471820-6471846
Coord A exon
chr17:6471847-6481570
Coord C2 exon
chr17:6481571-6481738
Length
9724 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
CTCTCTCCTCCTCTCTGCAGACT
3' ss Score
12.32
Exon sequences
Seq C1 exon
GTGCAGCTGCAGGCTCAGCCTTTGGCA
Seq A exon
GTAAGTAAAAACCTAACTGAAATGCTGGCATTTAACACCTCGCTGCATGCTCCTTGTGGGTGTCGCTAGGAAAAAAAAAAATGGTTGTTTTCTGTCCATTATCATTTTCCAGGCAATAAGTCTTCCCTAATTGCTCCTCATTTGCTGTCCTGTCAAAGAGTCTTATATTTTCTTCCCCTGACTTCAGCAGCCTCATTTTGCCTCTTCCTCTGGCATGGTTTCCCCCCATGAGGTTCGTTAGAATGGCAGCCGGAAAGGAAATAAAAAAAGACTCTTCAGAATCACCGCTGCTCGCTGTGAACTTTTCCCCCCCAGTACTGCAGAATTGTGCTCTGAGAAGGAGCTGGGTTTGAGTTATTTGGCGCAGCACCCGGGCTGGGTCACCTTGGGCTACCTATAAAAAACCACATACAGTGTGCGTACGTCTGTACGTCCACGTGTATGTATATGAACATATGTCTATGAGGTGTCTGCAGCAAAGAGTGGAGAGCTCAGCAGGGATTTCTCTTGAAAGATGGCTGGGATAATAAGGGGTCCTTATTTAACAAAGCTGGAGGTGGTTTTGGTATCAAAGAGCCCTGAGTTTGGGGGAAGCAGCAGCTTGGCTCTGGGTTTTGTGGCTCAGAATTGCCCTCCAGAAGAAACAAATCAGAGAGCTGAATGAATACTGAGCTCTTCAGTTTGCAGGCAAGTGGGAAGAACTGGAGGAGAAGTGGTTTCAGATAACTTCAAATGCAATTAAGGAAAACGCACCTAACTGAAAGCTGGAGAATAGGTGTTTTCTTTTTTTCCTGGGTAAATGAAGCATATTTAGAGTAATTTGATTTAAAATTTTCAAATAGAAGCTAAAAGTCTCCCTTAAGTAATTTAGGATTAAAAAAAGAAAAGCTTTACGAGTCCAAAACACTCTTTGCTTTTCTGATCAGGAACGTTTTGGCAACCCTTCTCCCCCTTTACGCAACCTGGCATCCTCAGCTCCGCATTTGTTTCACTGGAAAATGTTTCCCATCAAAATTTCCTGCCAGGATGAAGCTGGGGGTGTGCTGAGAGCAACGTGCAGGAAGCAGACAGGAGGGATTTGTATCCAAGGCCAGTTAAGGAGAGATTATTTAGCCCGCATAGGAGACTAGAAGTGACCTAAATTAAGTATTTAAACTAGCTCAGGGCTATTATGAAATTAAGCACAATAATCTGCATGAAGCAGCGGGACAAACAAGGACACGAGGGCAGCAGGTGTAAGTTAAGCAGGAATTTGTGTTCCACATGTTATTTCGGTCCCGGCTGTTGTGGCAGGCAATGGGCATCGCACCCAGCACAGTTCCTTTGCCCTGGTGGATGGAAGATGCGGGTGGGAAGGAACAAATGGCAGAGGCACAGGTTGATGTCGTTGGTGCTGAGCGGCTTTGGGGCGCTGGGGTGGGCACGGCTCTGCCATCTGGCACGGGGATGGCAGCCAGCAGGAGCCCATCCTGCTCTCTCCTCTGCACAGGGCGTGCTTTCTTTTCCTCTTTTCCAGTCTAATTGGCAATTAGTTTATGATAGAGCTGTAAGTATTTAAGCTAATATCGGCACCAACAGGGTAAGCTGGTACAACCACAGCCTCCAGCCCTGCGTGCACGCGCTCCCAGCGTCACAGCCTTAATCTGCAGAAACCTCCCAGTGCCCCACTTGGAACCGTGCTGGGAAATCGGTCACCAGCTCAGCCCAGGGGGGGGCAGAGAACGCTTCTGTGCCCTGCAGTAAAGTGCCTCCCACCTCTTCTCTTTGGTAGCATTTGAGCGACCGCAGCGGGTTACCACTGCAAAAACCACCACCGCAAAAACCACCCCCACTACCACCACTACCACCACCACCACCAGCGCCCCCCTTCCTGCCTCCACCACCACCCAGCCAGGTGGGTGCCATGCTTCCTGTACTCCTCTTTTTGCCTTCTTCCCACCCTGGCTCCTCTGGTGGGGCTGCTGTGGGTTTTCTGTGCTCTAGGATGATACGGGGACATGGATAAAAACCAGCCTGACAGGTTCACATCCCTCAACCTCGGAGCGGTCCTGGTTTGCTTTGCCCCTGTTCAGTCCCAGAGCACTAGGAGCAGGTGCCATGGTTCCTCCAACCATGAAGCCAACAGTTATAGGTCCACCTTGGAGCCCAAGACCACGCAGTGGGTTGGCATCCCCCTCTCCTACCATCAGGGCAGCAGGAAGAAGCCAGCACTGGATGCAGGGAAGCAACAATTTTCCCTATTTTTCCTCCTTTTTCTTTTTTTTCTTTTCCTCCAAAAAGGCACAATGGAAGAGGACAGGTCAGGTTTTGCTCACCTTCCTACCCAACCTCCCCCAGGGGGCTGCCTCTGCCTTTGCTGGCTCTCCAAATCCTGCCCCAAGTCCCAGCTCTGGTGCTGAGCTGCAGGCTGGCTGCCTGCTCAAGGGCAGCGTTCAGAGGGAGCTGGCACACACCAACGATCCCCAAGCAGCTCTGCACAAATAGAGGGCAGAGAATGGAGCTCGCACACGCCTGCAACACCCCTTCCTAATTTCTGCAATCACCCCGTGGAGGAAAACTTTTGTGCTTTCTCCTGGGGGTTCCTCCTCCCCTCCCCTGCGAACAAGGAGACATCATTTTCGCTTTTCTTTTGGAAACGAGCAGATAAAACTTAACAGCAGGACGTTTTTTTTTAAGCTTCTCATGGGGGAATTAGACACGCATTCCTCCCATTGCCATGCTTTCTGGGCCTGATATTTCCCAGGAGGACGATTTACACCCACAGTATGTTAGTAACAGTCTGTCTGGGGGAGCTGCCAGAAGCCAGTCAAAGGGATGAGGAAACTTGATTACATGTTTATGAATATCTCGCTGTATGCAGGGAGGTACCCCGCTCGGGAAGCTGGGGGTTTATCTCCAATTTCCACGGGCTCTGGGTAATCTTCTGCTCTGCCCAAAAGCTCTCCTCACCCATATACATAACCTACAGTGTGCATGGGGAGGTTGTTGGCCACCCAGTGCTCCCATCGCCACTATGTCCACAATGGGGAACCACCTCTCTGCCGCACGCTTGGGGTCATCTGATTTTTATCCATGCTCACCCACAGCAATATTTTAGGCCTGTTTTGTTGTTACTGTTTGTTTTTTGCAAGCGCTATGTGTACGTGGGTGGTGTGCTTAGTGCCTATCTCACATATGATTTGTGAGTGTTGTCCATCTGGGGTGGGCAGGGAGGCAGCAGCGCAGTGTTGGGGGTGAAGGGCCAAGCTGCTCTGAGCAACCTGGAAAGCACCCTGCATTTCAGGGTTATCCCTTCTCCCTGGATAGAATCAATGCCCTCATAGTGTTTTCACATCAGCCCTGAGCACCGGGTAATAAGTAGATAAAGAAATATAAACTACAGAGCAGCCACCACATCTGTGCCTCTACAGGGGCAGGGCTGAGCTGACCACCTCCATCAGCCCAGAACACAGCATCTGTGATGGGGAATCAAAGCACAGCCCGATCCTCATTTGTCTTAGAGCTTAAGAGAGTAGAGTTTGCCCCCAGTTCCTACCTTTGTGCAGGAAAGGAGATTCAGGCTGGGGTTTTGCAGCTGTCATGGTCTGTTTATAGAGGGAATCTGGTCCCCTGCCTCCAGTCTGCCATTTGTGTCCAGAGACATTCTCCCCACTGCAGCCCTGCAAAATGTAAAGTACTTCTTTAAATACCACAAGGGGCTCTGAATGGAACTCACCTGAACCTCAGGGAAAACACCTCATTAAAAAAAGGAGACCCGCTTGCACGAGCTGCAATAACCCCGAGATGGGGAACAATCCCCAGGTGAGATACTGTCATTGCCTCTCTCCTCAATTTTAGAAGCATGAAACAAATTCCTCCTTACTTAAAAGTCAGCTCAGACAGACATTAATAACCCCCCCCCCCAGGTCCCTGTCCCATCACTGTCTTGTTTCGCCCTCTAACATACACGCTGTTTTTTCACCCTCTGAATTTCTGCTTCCCACCATAAGCAAGCATCATCCGACCTGCCTCCGAGCCCGCTGCCTCTGTGCCCATGAAGGAGAAGGAGGAAAAAGCAGGTATTTCCAGTCAGACTGATGTGTTCTCCCTTCTCCTCCATCCCTCCGCACGCTGGGATAGCAGCCAGGCGCGGCACGTAGACTTACAGCGGTAGATCAGAGCTGGGCCGACTCTGGGTTGCGCGGGTCTGGCAGACAGCGGCTTCCTTTGGTTGTTCCCTTTGGCCGTCGCGGTGCTTTCTGTGGTCAAGGAGGAGCCGTGCCCACGTTCTTGGGATGCTTTTGTGCCCACTGTGTGGTGAGAGGGGAAAGGAGTGGGTTCACCAACACGGGCTGTGTTCTGAGCATGGCGGGGGCTGCCGAAAGGAGCAGAGCGGTTACCCCAGGGAGGATGGATTAAGTGCCATTCTCCCCTGCCTCCTGCAGGTTTGTTATTTCTAAGTCTTCCCCAAGCCTGTCAAATCCTCCTTGCCATTTGTTACGTTTATCCCCCACATTCAAAGTAAGCAAAAGGAGCTTTCTTGGTTTTTTTTTTTCCTCCCCCGTTTTCCTGCTTCCATTTTCCCTCTGGTTTGTAACCCAGCAGTGCCAATTCACTTCTGGGACGGACAGAACCGACCTAAGCTTTGGTTTGGGTTTCACCAACTCCCTGGTGCTGGACAAGCACATCCGATGCCCTTCTCTCCCAGATGGTCTCACACCTGGGGAAAGACAAGGGCTTCTCAAGGTCCTTCCCCTGTACTTCTGCACTGTTTCAAGCATCTCTTCCCCCACTGTGTTTTTCTACAAAGAATGACTCCTTGGCTCACTTTCTGCCGCCTCACCAGAAACCCCACCAGGACCCGGGGCTGCCACCAGAGCCTTTGAAGCCCCAGCAGGACGTGCCTGGTGCTCCCGTTGGCGTGGAGTGGGTTTGGGTGAAACACCTCTCTCCCACTCCCAAAACGTAGAACTGTCCATTAATGTCACAGAGCTACAAGGGAAAAGTTCTCAGGATAATGAGCATTAATAATTTTCCTGGCTCTGCAAACGCGATGGAGTGGAGGTGTATGCGAATGACTAAAAAGCAAAATGCCTCCAGGGCTGTTTTTTATTGTGACTCTAATTAAACCCTTGCCAATTTGCACAGGGCTTTCTTCATATTCTCCTTTAACAGCGTATTAATATCAATTGGTTCCCACTTTCCAGCTGAAAAGGACAATGTCTGTCACCTTCTCTTAGAGCTCATCATTTAGGAAAAAAAATATATTCTTTTTTATTCTGCATTGTTTATGATCCCCTTGACGAGGCTGGGAAATCACATTTCTCTCCTACTCGGGTTTGTCCTTTGAAACTTGGCAAGGATCAAGGGATTTTTTTTCCCTCCTCCTCCTTATGTTACCCAATTGGAGCCTGAAATTAATAATGTGGCTTTTGAATTTGCATTCCTCGGTTTGTTTTCTAGCAAACCTGAAGATTGTTACCACTACTGAGGAGACAGAGAGGGGTATGGAAGCGGTGGGGTTGTGAGCGTGCAGAGAAACCAAACTAGGGATCTATAAATGTCCCGCTGCTTTGATTTCCCTGCAGGGGCTTGCAAATTCTCTAACTGCTATTTCCAAGAAAAGAGCAGAGGCTGAAGCAGGCCGAGCTTACAGCAGAAACCAGGACTGGGTGCCTCCAACGTAGGATACGTGCGCTGTTCCTCTGCAAGCACACAGAACTGAACTAAAGCAGTGCTTTCGGAAGGGCTGAGAACAGACAGCCCAGCGCACTGCTCCCCTCCCGTCCTCTGCACTGCAGTGTGGGGATGTTGGCTGCCAAATCCCACCGAGGCACAGAGCCCTGCACGGCACGCGCTCCCAGCAACAGCCACAGGGCCAGGTTTTGTCCTCCAGCACAACGCAAAGCTCCCTGCTGGTTTCCAGTTCCCCAGCACCCCTCCTAACACAGCTCTCTGTCTCATTGCTGCCAGGCTACCCCGGCCTGTCGGCGGCCGCCCCGCTGCAGGTGGGCTCCCCCCCAGCCAAGGTTGGGGCAGCAGAAGGTAGGAGGCACGCGGCTGAGCCGGGTCCTGCCAGCCAATCCCCGCTCCCACCGCTTTCCTTTGTAGCCCTGCAGATCTTCTTTCCATGCATCTCTCTCTTCCTCCCGCCTGGGAAAAGCTGGGGGTTTGTCTGTGCCCTACATGCAGCCGGTAATCTGGTGAGGCTGGATTGAGCCTCGGGGTTTAGTCGCATACATGAAAGATGAGGATGATAAGTGGTAGAAGAGATTGTTCTCGGCTTGCTGCTGGGGTGAACAGAGAGGATCATGGAAATCCTGTTGTCTCCTGAGACCAGAATAACTTTGTAAACAGATAGGCTTGTGTCGTTTATAGCATAGATGCCTTCTTACATATTTCCTTGCTTCAGGTCTCCCACGTGTCTGCCTACGGTGAGCTATGAAGCTCCTGCTGGGAGCCCTGGGAGGCTGCTGGGGCTGAAGTTGGAGCTCCTCAGGGTTCCCACTGGCACACACGCTTCGGCAGCTGCTGGTGGTGCTCACTGCCCTTTGCCAGCTGAGATGCCTGTAGCTATCTCCCCCATAGACATCAGCATCCCTTCCAGTGCAGAATGTAACACCAGCTGGAGCTGGGCCAGGACACAACCCAGCATCTGCTAATAGTCAGTGGGGGAAGTGCTGGAATTCAGGCTCGTTGGAACTGTTGTGCTTTTGGGCTTATCTCTAACCTCACAGAGAGGAAAAATTGTATTTGAAATAGCAGCGAGATAGGCCAACACCACTAGCATCAATGCCAGGTGATGCTGACAGTCTGTACTGAACAATGGGGACTTCTGGGTCTTGGCAGCAGTCTGCTTCTCTCCACGCTTCATGCAATGCAGTGACCACACGTCAGCACTCACCTGTCCAGCAGCTCCCCTTAGGAGTAGCTTCTGTACTGGAAGACCAATCTCCAGGAGATTTTGTCTCCCATACATGCCCCAGTGTATCCTCAACCACACGTGGCTCTACCCTCCATACCTGAATAGAGCTTCCAGTGTCCTTTTCTCACCTTTTGAAACAAGCAAGTGCAAGATTTGTATTAAATCTGATGTTCTCTCTGACTGATGCCACCTTAAGCTGTTCTGAGCCCAACAAAAGTGGCAGCACCTGAACCCAAGCTGAAGGCACCAGACCCTCCCAAGAACATTCGAGGTAAGGTCCCTTCCCAGAGATGGGGCAGGGCTGTTTTCTCCCTCATTGCCCACAAGTTGGGGACAACGCTCCCGTCCCCAGTAAGTCCAACATTGTGCAATCCATTCTCCCACTCACAGCTGAGATCAGCTCAGTTCTGCTCATTCCAGCCCATGGAAGTCTTTCTGAAGGCTCTTCTAGGGTTGGCAGACGTGGATGGGTGGGACAGACCAGAGAAACCGGGAGTCAGTTTCCCTGTCCACCATTCCTTGAGAGGCCATTTGCCTTTTCCACACTTGGAGAACGTGGAAGATACACTGGGGGTCCCACGAGCACCAACTCAGCCACGGGCAGCCACTTCTCCTGGTGGATCAGCCACCACCCAGCCCAGCACGGCAGGCACGGGGGGCTCTGTATCTCCACCTCAGCACTCAGGTATATTTTATCATCTCGTGTAGCAGCTCCGAAGAGCAAAGCAGGGCGCACAGCACACTCTGCAGGCAAGAGGCATGGGAAGAAGTCAGGTAGGTGCTGGGATGGGCAAGCGGGCTGGAGCAGCCTGGGTTCTGCAGGATTCTGTGCTTTATACCACCTCCGTAGCTTTTGTGCTCTTAGCTGTGGTCCTAGCTGCTTTTTGAGGGTGGTGAGGGGCTGTCTGCATGGCCGTCATCAAAGCAAGGCCGCAGACAGGAGCTCTTTAGACCTGTAGATCCTCAGCCTGGCCAAGCCAATCCCACGTGTAACCAGGGGATGTGTGGACGGCTCCTTCTGCCCATCACTCAGCTCTGTGCATTGCAATACTGCCGTGCATGGAATTTTTCATGCATCAAACTTTGAGGAGGGGAGAAGAAGAGGAGAAATTTAGCAGCCACCAGCTGTCTGGTGCAGAAATAGCTTTCCACGCTGCCAGCGCGGTGTTCCTGACTTGGCTCATCATTGTTCTCATAGCAGAGATGCTCGCGGTAGTGTAGGACGCAAAGTGGTGCGGAGCAGTGAGAAAAAGCTTGTCTCTGATTTTTCTTAAGCATCCTCAAAGAACTCAAAACTCATCCGGCTCCAACCAGACACCGGCCCAGTGGCTCCTATTGAGACATATAAAGGTAAGAGGAGGGAGTGAGGAGCTCCAGGGCTCCCAGTCCTCGCCAGAGCTGCAGCCTCAGACATGGAGAAGATGGGGAGGGTTTGTCTATGTAAGATCACCCACCTCGGGTGAAATACTGCTCGTGAACTGCAGCAGCAGAACCACGTGAGCTGCAGTTCTTTGGATAGCGATCAGGCAGGTAGTGGTTGTTTCACAGAGGGTCTCAGCTCCTACTCAGGCAGCTGCAAATCATGGGGAAACCTCTGCCACACTCCATCTTCCTTGATCTTCATTTCATCGGCATAAATCTCCTCCTTCAGCCCTACGTGCATGCCTGCTCATCCTTCCCTGCCATCACTCTGCCATGCTGGAATGTTTAATGTGGGAGCCTGGACCCAAACCCCTGATCTGAACCCACCTCCACCTCTCCAGCACTGGAGAAGCTCAGACCTGCCCAACGCCGTCCCTGCTCACACTGTCCCCTGCCAGCTGGCTGGGACACCTCCAGAGCAGGATGACTGTGCCACTGAGCAGCCAGGAGCCCTCCCTTCCTCTTGTGTTGTCCTCTTCAACTCCCAGAATGGTTCATTATCCTGAACACAGCACTACAGCACTGCAAGGTGTCCGCCATCCCACATCACAGTAATAAAAAGCAAACACAAGAAGCAAATAACCAAGTTCCTCCAGCTAGAAATTAAACCTAGGTGGCTGTTTCTCAACACACACCCACAGCTGAGAAAGGTCAGCCCAGCACAGTGGGGACACGAGCAACAGTCTGCTCAGCAATGGCAACCCTGTGCCATGCCAGGCAGTGCTGGGTCACCTCCCTGTGCCCAACTCCCTTGGAAGAAGCCCACACAAGCCATGCATCCTAGCACATGCTCATTTTAAGCTGTAACACACTCAGCCAGAACTGAGAGTCATCACGCTTCACAACAGGCATTGCCTGGGGAAGTGCTACTGCAAAGGCAATGCTAAAAAGGGACACATGAGTAAAAGGCCAGAGAAGCAGCCAGGGCTTACCTGCACATGCAGCAGGTTCTGCTCATCCAGAGCTCTCCCATCACCTCCTCTGCCAGCCCAGCTCCTCCTTGTCACCACCAGGCAGGGCACAGTCTTCCCCAGGGCTCTGCATGCCCCTGCATAGCCCCATGCCTCTCCCTTCTCCCAAACATCAAGCTGGGCTCTACTGATTAACAAGGCAGCTCTTTAATTAACACCTGACAGCACTCCACAGCCCCCTGGCTGCTCCTGTAATTATGCATTTCCCTGAAGAGCTGTGTCCTGGGGCTGCCTCCTGCCTGTCCTTACCCTGCAGGGACAGACTACCCTGGCCCCACTCCGAGCAAAGACCTCCAACCCAACCCCCGTGCAGCAGTGAGGTACAGCCCCCACTGCAAGCACTCAGTCCCACAGGCAGCAGCCATTGCGTTTTGCTGGAGCAGAAGGTTTCCCCGCGGCCCACCTCTCTCTCTCCTCCTCTCTGCAG
Seq C2 exon
ACTGCGAGTGCTACGGCCACTCCAACCGCTGCAGCTACATCGACTTCCTGAACGTGGTGACCTGCGTGAGCTGCAAGCACAACACGCGGGGCCAGCACTGCCAGCACTGCCGCCTGGGCTTCTACCGCAACAGCTCGGCGGAGCTGGACGATGAGAATGTATGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003677:ENSGALT00000005827:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.045
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(0.1=0.0)
A:
NA
C2:
PF0005319=Laminin_EGF=WD(100=94.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]