GgaEX1040614 @ galGal4
Exon Skipping
Gene
ENSGALG00000003677 | NTNG2
Description
netrin G2 [Source:HGNC Symbol;Acc:HGNC:14288]
Coordinates
chr17:6471820-6481738:+
Coord C1 exon
chr17:6471820-6471846
Coord A exon
chr17:6473618-6473740
Coord C2 exon
chr17:6481571-6481738
Length
123 bp
Sequences
Splice sites
3' ss Seq
CCACCTCTTCTCTTTGGTAGCAT
3' ss Score
6.11
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTGCAGCTGCAGGCTCAGCCTTTGGCA
Seq A exon
CATTTGAGCGACCGCAGCGGGTTACCACTGCAAAAACCACCACCGCAAAAACCACCCCCACTACCACCACTACCACCACCACCACCAGCGCCCCCCTTCCTGCCTCCACCACCACCCAGCCAG
Seq C2 exon
ACTGCGAGTGCTACGGCCACTCCAACCGCTGCAGCTACATCGACTTCCTGAACGTGGTGACCTGCGTGAGCTGCAAGCACAACACGCGGGGCCAGCACTGCCAGCACTGCCGCCTGGGCTTCTACCGCAACAGCTCGGCGGAGCTGGACGATGAGAATGTATGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003677_MULTIEX1-1/5=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.548 C2=0.045
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(0.1=0.0)
A:
NO
C2:
PF0005319=Laminin_EGF=WD(100=94.7)
Main Inclusion Isoform:
ENSGALT00000005827fB10075
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]