GgaEX1040618 @ galGal4
Exon Skipping
Gene
ENSGALG00000003677 | NTNG2
Description
netrin G2 [Source:HGNC Symbol;Acc:HGNC:14288]
Coordinates
chr17:6471820-6481738:+
Coord C1 exon
chr17:6471820-6471846
Coord A exon
chr17:6480026-6480100
Coord C2 exon
chr17:6481571-6481738
Length
75 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTGATTTTTCTTAAGCAT
3' ss Score
6.47
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTGCAGCTGCAGGCTCAGCCTTTGGCA
Seq A exon
CATCCTCAAAGAACTCAAAACTCATCCGGCTCCAACCAGACACCGGCCCAGTGGCTCCTATTGAGACATATAAAG
Seq C2 exon
ACTGCGAGTGCTACGGCCACTCCAACCGCTGCAGCTACATCGACTTCCTGAACGTGGTGACCTGCGTGAGCTGCAAGCACAACACGCGGGGCCAGCACTGCCAGCACTGCCGCCTGGGCTTCTACCGCAACAGCTCGGCGGAGCTGGACGATGAGAATGTATGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003677_MULTIEX1-5/5=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.038 C2=0.045
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(0.1=0.0)
A:
NO
C2:
PF0005319=Laminin_EGF=WD(100=94.7)
Main Inclusion Isoform:
ENSGALT00000005827fB10079
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]