HsaEX1026290 @ hg38
Exon Skipping
Gene
ENSG00000196358 | NTNG2
Description
netrin G2 [Source:HGNC Symbol;Acc:HGNC:14288]
Coordinates
chr9:132235651-132239271:+
Coord C1 exon
chr9:132235651-132235719
Coord A exon
chr9:132237421-132237522
Coord C2 exon
chr9:132239104-132239271
Length
102 bp
Sequences
Splice sites
3' ss Seq
CTGTTTCTCATCTCTCCAAGCTG
3' ss Score
6.17
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AGTGGACCAGGCCATCTACGGCTGCCCCTCTCTCGAGCAGGTGGTCCCAGGTGGCCTCCCGTGCAGAAG
Seq A exon
CTGTGGGCACCCCTGCCGCTGCCCCTGCCCCTGCCAAGGGCTACAAACTTTTCCAGCTCAAGCCCAAATCTCCTCAAGTGATGCCTATTGAAGAATTCCAAG
Seq C2 exon
ACTGCGAATGCTACGGTCACTCCAACCGCTGCAGCTACATTGACTTCCTGAATGTGGTGACCTGCGTCAGCTGCAAGCACAACACGCGAGGTCAGCACTGCCAGCACTGCCGGCTGGGCTACTACCGCAACGGCTCGGCAGAGCTGGATGATGAGAACGTCTGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196358_MULTIEX1-5/5=4-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0005319=Laminin_EGF=WD(100=94.7)
Main Inclusion Isoform:
ENST00000393229fB21472
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGACCAGGCCATCTACG
R:
TGCAGACGTTCTCATCATCCA
Band lengths:
234-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains