RnoEX0061349 @ rn6
Exon Skipping
Gene
ENSRNOG00000013694 | Ntng2
Description
netrin G2 [Source:RGD Symbol;Acc:1307089]
Coordinates
chr3:7744982-7752862:-
Coord C1 exon
chr3:7752836-7752862
Coord A exon
chr3:7746798-7746899
Coord C2 exon
chr3:7744982-7745149
Length
102 bp
Sequences
Splice sites
3' ss Seq
CCATTTCTTATCTCTCTAAGCTG
3' ss Score
5.13
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTGCAGCCGCAGGCTCCGCCTTTGGCA
Seq A exon
CTGTGACTATCCCTGTCGCCATCCCTTCCCAAGCCAAGGACTCTACACTTTTCCAGCTCAAGCCCAGATCTCCTCAGGTGATACCCATTGAAGAGTTTCAAG
Seq C2 exon
ACTGTGAGTGCTACGGGCACTCCAACCGCTGCAGCTACATTGACTTCCTGAACGTGGTGACCTGTGTCAGCTGCAAACACAACACTCGAGGCCAGCACTGTCAGCACTGCCGCCTGGGTTACTATCGCAACGGCTCTGCCGAGCTGGATGACGAGAACGTCTGCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013694-'17-15,'17-12,21-15
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(0.1=0.0)
A:
NO
C2:
PF0005319=Laminin_EGF=WD(100=94.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]