HsaINT0116420 @ hg19
Intron Retention
Gene
ENSG00000196358 | NTNG2
Description
netrin G2 [Source:HGNC Symbol;Acc:14288]
Coordinates
chr9:135105959-135114658:+
Coord C1 exon
chr9:135105959-135105982
Coord A exon
chr9:135105983-135114490
Coord C2 exon
chr9:135114491-135114658
Length
8508 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
CTCCCACTTGGCCGGCCCAGACT
3' ss Score
2.34
Exon sequences
Seq C1 exon
GTGCCACTGCAGGTTCCTTTGGCA
Seq A exon
GTAAGTACACGCCTGGGGAGGGTGGCCAGGGCCCCCACTGCACGAGCCTCTTTGCATGTCCTGGAAAAAGCTGGAGAGAAAAAAGGGGCTTCAGTGTCCCCTCTGGGACTTGGGCCTATTCACTCCCTCCTCTAATTACACCCCATCTGCTTCTCCACCTCTCCCCCCTCCACCTCCCCCCCTCCACCCATCCCCACTTCACATCATATGCCATGTGTCATGTGTCATTTTGCTGTGGCCTGTGGCCCAGCAACTCTCAGGCTCTCCCAGGAGCTCCATCAGTGCTGCTTTGGAAAACGGGACAGGACTTTTTGCAGGTCTCTTGGCCCCTGGGTGGGCTCCCTGCTCCTCCTGCCACCCACGCCACTTCTCTCACCTGGATCTGGGAGAGCAGTCTCTCCTGCCAGTCAAGAGTGGGGTGACCTTCCCCCACCAGGGGCAGAATCCACCCCCTAGCCTAACCATGGGGGCAGCCTCCCTCTGGGCAGCCTCTGCAGCCAGCTTGTCCCAGGGCTCTGCTCGTCCAGGTCAGCTCAGGTCCCAGGGGAGTCGGACCAGGGAGGGGCATCTGCAGGAGGTGGGGGTCCTGAGAGTTCCCCAGGAGGGCGAGGGCGACATGGCGCCCACAGGTTATCAGTAAATGTCATCGAGACTGTCCCCAGACACTCACAGGGTGCCAGGCACGGTCTCTCCTTTCAGCCTTGCAAACCCCTCCCCCTGGGAGGTCGCCATCTGCTCTGCGAGGCAGCAGGAGAGGACTGGCCAATGTCAAAGAGCCAGCCGGGAGCAGACCCCAAATCTCAGAGATGCTTCTGGGGTGCACCGTCACCCTCCACCAGGGCTCTGTGGGGCCCCACATCCCACCCAAGTTGTCCCTCCCGGACCCAGGGGGCCCCTGGCTGGGAAGCCAGTGAGCCGAGAGGGCGCCAGAAAGAAGCTGGACCCTGCAGGGACGCTGGTCTGCACAGCCGTCGTAAGTTGCTTCTCTGTGGTGTCCCCACCCCGGCAACCCCCCAACCCTCTCTTGCTTTTCCCATCTCTCACCAGGCATCAGCAGGTCCCAGAAAGACCCCGACCCCAAAGGCCCTGTGGCCACTGCGGCCACCACAGCCATGACAGGGGCCCCTACTACTCCTGTCCCCTCCACGTCCACTGCCTGGGCCCCCATGGCGCCCAGCACCCCACAGCCCACAGGTGGGTGCCAGGGTACAGCGACCCCTGTCATCCCACCCTCTCCTGCTTCTAGCCTGGGTCCCTGCCTCTCTTGGGGTGGGAGGGTCGGCAGCCCTGGGCAGAGAGCAGGGGCTTGGCTCTTAGAATAGAGACGCTAGAACCCTAGAGCTGGGAGGCCACAGGCCAAAGGGGCTTGAGGACACCTGGGTCAACCTGTTCCTGAGCCCAGCCAGGGGATTCAGGGATCAGTTCAGCTTCCAAAGTCGTCTTCCTCCTGCCCTTCAAGCCATTGCTTGGAAGGGCTCCCAGACCATTGTGGCCAGACGGCTGCAGGAACTGAGAGGAAAGGTGCTGGGGGCAGCGAGGCCATCCTGACATGCAGCCAAAGACTGGCCTTATCTCCCAATGGTGCTTCTGCCTCCGTGGTCCCTGGAGCCCCGCCCACACCCTGTCCCCACCTGGCCCCCAGGGCCTCTCTGTCCTTAGCCCCTCAGCAGCACACCGGTGGGATGGATGGAGCAGGGTTAGCCCAGAAAGCAAATGTCTCTGATCAGCAGGGCAAAGGGAGCCTCTGGAGCTGAGTTTGGACACCGTGGGCTGCTGGGAATGTGGAGGCTGTGTGTGTAGTGCAAGGCCAGGCCAGGGCCAGACGTCCTGCCCCCTCAGGGGTCTGCCACAGACAGGCATGGAAACCTGATTCTCGCTCCCCTCCAACGGAGGGATTCACGTGTATTCAAGGCTGGGGGTGCTGGAGTGGGCCTCTGCTCTCACCTGGACTCACCTGGGGAGTATCCCTGCACTCTGTGCAGTGCAGGTGCCAGGGGTCTGAAAGGATTTATCCTTCCCAGAGGGCACCAGGAAGACGATGACCAAGGGGAATTCTTCCTGGTCCCAGCCAGGGAGGGGTGCTCCAATAGCCTGCCACACCCTGTCCCCCGCCACCCTGCAGGGAGGACCTGGTGGGGACTCCTGGCCCCTTGGGTAGTGCCCTGGCCCTCCATCTCTCTGATCCAAGGAGACCTGCCCCACTGATCCTTCCCCCTTGGGGGGTGGCATTTCTAAAGGGCAGAGTCCCCTCCATCAGCTCCTGCCTCGGCCTGTTGCTGGGTGGACACTCAGGCTCCCCAGACAGGGGCAAATGCTGAGAGAAAGACCTCCTCCTTCCTAGGCCATCCAGAGCAGCTCCCCTGGGGGCAGCACACCCCACCTCTTTCTACATCCTTCCTTTTCTGCAGGAGGCATTTACAGGAGGCAGGGGCTAGCCAAAAGATTGGAGGATTTCCGGGAAGCCTCCTGACCCAGGAATCCTCTTTGGGGTGGAAGACATGGGTCACTCTGAGAATTCTGGACTTCAGACATAGGTTGGCCCAGCCACAAGGGACCTGTGCTTTGCTGCTGAGCCTGTGGTGGGCAGACAGAAGCAAAAACAGTGGTGGTGGGTGCTGTGCCTGTCTCCAAACAGGGGTTTGGCTGGGAGGCCAGATACTCTCCATATCACATGTGCAAGTGCACACATGCACACACACACATGCATGCACACACACAGGCATGCACACGCACATGTACACACACACACACACAGAGGAATCCATTTGCAGAGCTGCTTCTGACTTGGTGCCAGGGCAGCCGTGGGAGGCTGGGCAGATTGTGCAAAGTTGGGAATTAAAGAGGAAAAGTCAGAGGCCAGAGTGGGAAATGCAGGGGAGGTGAGGGTCCCCAGGACCCCCTCAGTGAGCAGAAGGCACACCCTCCCTCTCGGCAAGACAGTGCTGCTCTGCACCCTCAGCCCTGTATCAAGAAGCAGGACATTAGGGGAGGAGGTGGCTCCAATGTGACAGCCAGTGGCCCCTACAGCCCACATCTAGGGGCTCCTCCCTCCTCTTCAGCAACTGAAGCCCCTGTCCAGAGCCCCCATTAATGAAAACGATCATTGCAGTAGCTGAGGGTGAGTTCTCCTGGGCTGTGCTCGTATCATTGTATCATCATATCATTGTATTCTGGGCTCACAGCTCCGTGAGATGGAGGCTGTTATTTTCCTAGTCCCACAGGTGAGGGGATCGAGGCTTAGGAAGAAGCAGCTGGATTTTATGATATGTAAATTACACCTCAATCAAGCTGTTTCAGAAGAAAAAAGGGGCAGCTGCTCAAGGTCTCAGAATTATGGAGAGGCACGGGCAGGATTTGAACTCAGGGCTCGCCAACTCAGCCACCCAAAGCTATTGTCCTGAGGCCTCCAGGGGCTATGAGGTAGAGCTATCTTTTTTTTTTTTTTTTTTGAGATGGAGTTTCGCTCTTGTCGCTGAGGCTGGAGTGCAATGGAGCAATCTCAGCTCACTGCAACCTCCGCCCCCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCACCTGTCACCATGTTCAGCTACTTTTTGTCTTTTTAGAGAGACAGGGTTTCACCATGTTGGTCAGGCTGGTGTTGAACTCCTGACCTCAAGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTCCAGGCGTGAGCCACCGCACCCGGCCAAGTAGTGCTGTCTCCAAGGCCTGGCTTGCAGGGCTTCCCAGTTCCAAAGGAGCAGACCGGGCTTCCATGGGGCCTTGGCACAGCACACAGGCCATGGCGAGAACTTGCTTCCCACACACCTGAGTGTGTCCCTGGGCAGCCAAGCCAGGACTCTCTCCCTCCCCAAGACCCTGGTCCCTGAAAGATCCTGAATACCCCCGAGTGCCTCCCAACAGGTGCTTCGGGCTCTTTGAACAGAGTCCAGCTGGGCCTCTGAACTCCTGGGCCAGATGTTTCTCCCGCCTGCCAATGTCAAGCTGTCTGGAGGACAGCGCTGCGGGCGGAAAACGCCGCTGGAGACACTAATCCTTTCCTGGGCTGGGCCACGGAGGATGGAGGGAGACAGGCTCTGAAGCAAATGCCTTCAGGGCTGGCTTTCTCATGGCTCTAATTAAGCCCTTGCCAATTTGGGCCTGGCGGCCTCATCTTCCCACTGAACATCATATTAAAGTCAATTCATGTCCAAAGCTCCCCGCTCCCAGCTGGAAAGTCTTCCGCACTTGTTAGCTGGTAGCTTTTCCTTTTCTTTCCCCACAGCCACCGTTGTGTATAATCCCTTCAAGAAGCGGAAAACAGCAGCGCTCCCCTGTCCCTCTGGGTTTGTCCTTTGAAATTTGGGCACAGGGCAGTTCTTTGCCAGCCCTGCCTGCCTGCCTTGCTGGCTGTGTGTCCCGTTAGTCTACGGGCTGAGCGTTGTGTCACTGGTTCATGCTGGGGTCCCTGGTGAAAATGGGCCAGGCCAGGGGTCAGGAAGGTAGAAGGGCAGTGATCAGGGAAGCAGGTCAGATGCTGGGGAAGGCTCCGGTCCCTGGATTGCGGCTGGACAGGAAGGACACCTTCCAGGACACTTCTGGACACATGTAAGATCTTGGCCGGAACACATGTCCCACTTCGCAGCCATTAGCCAGAGACATCAGCTCAGAGAGGTCTGGGCCCAGAGGCGGGACCTGGTCTAGCTCTGTCCTTCAGTCAGAACGGGGACGGCACAGGGAGTGTAGAAGGGTCTCGCTGAAGAATATGCAGATTCTCAGGCATGGGTTCACCTCTCATCTATCGGGCTTTAAGTCTGCATGTGCCCTCCACAGGCTGAAATAGTGTAGATGCTGCCTATGTAGTAGATTTGGACCCAATTCCTTTGGCCAGTGTAGACAGAGCCTCTCCTTATAGTGCTGCTGCTTCTAAGGGGCCTGTGGGGTGCGGGGCTGTGATGCCTCAGTATGTACCCAGCTTCCCTCAGCACCACCCCCTCGCATAACTTGGTTTCTTCTCTTCTTCCCCCCAAGAGTGGACCAGGCCATCTACGGCTGCCCCTCTCTCGAGCAGGTGGTCCCAGGTGGCCTCCCGTGCAGAAGGTATGGGGGGGCAAGGCCTGTGATGGGCCTGAGACCCCGGGGAAGCGCCCTCTTAGACTCGTAGGCCCCTCCCTCTGTAGTGGAAGTAGCAGGTGTGCATGGTGGGGACCTGAGGTTGGAGGGGGGCCGCAGGAACCAACTGAGGGCACGGGTGTAGAATGTCGGTGCCTGGGGAGCTCTAGGGCACAGTGGTGAGGGAGCGGCCTGGTAGAGCAGGTCTACCAGCTCTGCCCCCAAGCTCACCTGCTTCAAGAGGTTCCATGTGGCACCCCCACGCCAAGCCCTTCCACCAGCACTCCCTCCGAGGGCTTCGGAGTCTGGTAGAGGCCCCGCCTCCCACGACAGGAACCCCCCTCTCCAGCTGCCCTTGCTCACAGGACACCTGGGCAGTTGCTGGATCAGAGAGTCAGAGGGGGCTTCCTGCAGGAGCGGGGGCCATGAGACCTCGGAGGGTGGACTGTGGTGGGTGAAGGGAGAAGGCAGCACATTCCAGGCCGCAGGGCCAGCCGGGGCAAAGGCTTGGCAGTGGGATGGCAGGGAGCCTGACAAAGTGGAAAATGTGTGGGTTAAAGGAGGGAGGGCGGGGTCCTGGAAGACACTGACATCCTCCTGCTACGTGGGAGGAGACACAGGGCTCATCTGTAGCCATAGACAGACATGCCAAGGAAACGCGCAGGCCTGCCCGACTCTCCAGAAGGGAAATTGTCCCTGGCCCCAGCTCACCAAGCCTGGGTGGGGAATTAGGGCCTGAGGTCTAGGGAACAGGTGAGCTGTTCCTTCCAGCTCACATGTTCAAATTTCCTCCAGCCCCAGCTCTGAGCAGCGAGCAGGGCTTTGAGCGCCCTCTACTGGCAGGAAGCTCTGGCGCTGGAAGCATGTTTAGAGAGGGTCTGAGGCTCGGTTCCTAGAAACCTGGAGGACCTGGGCCTGGTGTCCTCTGTGGTGATGGAGACAGAGCTGGCGGGAGCCATCGCTTCCCTACCCTGGGCCAACCAGGGCACCACAGACCCCCAGAGGGAAGCCAAGGTAGTGACGATCCCGGGACAGTGGCCTGCTCACCCACAGATAGGGCGTTGGGGTCCCAGCGGGATTCTGGGCAGTGGAAGGCAGGTGCCGTCCGTGTTCCTGGCTTGACAGCACTTGCGAGTGGGACTCCAGGGACAGCGAAGGATTCACTTCGGCTGGAGCAGGAAGAGTGTTTCAGAAAGGAAGGGAGATGCCAAAGTCCTTAAATGCCAAGTTTAGTCTCTGGGTTTGATGCTCCAGGAAGTTTGGAGAGGCGGTGGGGAGAGCAAGAGACGGGCGTGGTGTGCAATGTGATGTCAATCTATCTAAAAACAGTTTGGCTTCCAAGAAGGTCTTAGCAGGGCGCGGGGGTGTCAGGGGTTACAGAAGTCATTTGGAGGATTAATCCAGCCAGATGTGTCCATGGTCTCAGAGAGGGGACCAAGGGCAGGGCTGATTTGCAAGCTTGGGATGTGCTGTGTTTCCTTCAGGAAGGGGCCCCACCTCCCTGGGCTCTTCGAGGAGAGGGGCTGTGTGATTTGAGGCCAGAGGGGCCTCTCCCTCCCTCACATCTGAGCAGGCGACAAGGCTGCCTGCCCTAGAGCTGGCCCAGGGCGGCTCGGAAGCCTTTGCTGGGCTCTTCCCTGGGCAGTGGGACCATGACAGACGAAAGAACCTGTTTCTCATCTCTCCAAGCTGTGGGCACCCCTGCCGCTGCCCCTGCCCCTGCCAAGGGCTACAAACTTTTCCAGCTCAAGCCCAAATCTCCTCAAGTGATGCCTATTGAAGAATTCCAAGGTAAGAGGATGGACCTGGGGCCCCATCAGCCCTCCCTGACACCTGTTCCCCATCCGCCGCTGGAAAAAGACGGTGCAGGATAGAGGACCGATGCCTGGCTCCGAAAACCCTCCTGGAGTAGCTGGGTCAAGGTTAAACTGAGTCTCTCTTCCCTACAGGCCTCCCTCCCCAAGGGAGCTGGGAGCAGGTATGAGTCAGAAGCCAACTTGGGCACAGTGGGCAGGCCACACAGCAGGCAGAGCAGATGCCAGAAATAGCCCATCCCGGCTCCCCTGGGAGGTGTGGCCCTGGGGCTCGTGTTGGTTGAAGCAGAATCTGGGACACACGGGTCACCGATGCTGCTCTTTGGGACACTTAGAGGATGCCTCATCTCCTCATTATCTCTGGAGGGACAAAGTGAAGGGGGCAGGACTAGGTGGCCCACAGGTGGGAGTGCCCACCATCTCTCCTGGGCACAGGCTGTTTCTCTAGTCTCCCATGCCCTTGACCACTGGGTCAGTCCCTCATCCCATCACAAAAGGGAAGCTGGGTCCTCTAGAGATACACAGATGGTGTTTCAAGAGGGTGGCCGTTGTCCTTCCTTGTTCGGGGGCAGCCACATTGGCTTTCTTGCTGGAGGGTGGGTGGGTGGGTGAGTACTGTGTCCCTTCGTAGGAACATCAAGGGATGCCCCCCCATTCTTAGGGATGGTGACCTTCCTCACCAAATCCTCCATTGACAATGTGGGATTCACCTCCAATCCCTGAGAGCCTTGCCCCAGGCAGTCACGGGCTTGTCTGGTCCTTGGAGCGGAGCTGGTTAGGCAGGGGTCAGCCTGAGAACCACGTAGGGGTGGGGTGCAGGAGGCGGCAGGACATGGTGGTGGTGGTCCTTGGTATGAAACCATGTGCTTCCAGGAGCAGCGAGTCAGAAGCCGGGCCAGGACCAGGGGGAGGCATGCAGGTTCCCAGGGCTCCTGCTTTAAAGTGGCACTCACTCTTAGCATCCTGCAAAACAATCAAACTTGCAGAAAGCTCAGGCTAATAAGAAAGGGTCTGGCAGGTGGGCGTTTTCCTCCCAGCCATCTTCCAAAGCAGCATGGGCAGGAGCTCCTGGCCCATTGCATCTTGTCCAGCGTCCATCCATGCATTCATCTACCCGAGGATACCACGGCGAGCGCCGTGAACCCAGGCGTCGCCCTCCCCCAGTGCACAGCCAGGTGGCATGACCCTGCCCTCCTTGCATGAATCACTTTCTAATCACCCCGGCATGTGGGCATCCTTCAGCGAGCGCTTGGCCCTGGTGCCCAGCCAGGCATTAGCAGGAGCTGCCCACTGGCCCTCCCTGGTTCCCTGCCCACAGGGCCAGGTGGGAATCCCTGGGCTCAGCCTACTCAGGTTCTCCTCTGGGCTCAAAGCAGGGAGGCCTCTCTCTTCCTGAATCCGATGGAAGGGTGGGAGGCCTAGGGCACCTTCCGGTACCTTTTCCAAAGATGCCTTCCTCCGTCCCTGCATGACCTGGGGTGAGTCCTTCCTCGCCCTGTCCCTCAGTTTCCCTGAATGCTCGCTGACCATTGGTATTTCTCCCACTTGGCCGGCCCAG
Seq C2 exon
ACTGCGAATGCTACGGTCACTCCAACCGCTGCAGCTACATTGACTTCCTGAATGTGGTGACCTGCGTCAGCTGCAAGCACAACACGCGAGGTCAGCACTGCCAGCACTGCCGGCTGGGCTACTACCGCAACGGCTCGGCAGAGCTGGATGATGAGAACGTCTGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196358-NTNG2:NM_032536:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(0.1=0.0)
A:
NA
C2:
PF0005319=Laminin_EGF=WD(100=94.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)