BtaINT0104260 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007235 | NTNG2
Description
Bos taurus netrin G2 (NTNG2), mRNA. [Source:RefSeq mRNA;Acc:NM_001099025]
Coordinates
chr11:102351692-102353381:+
Coord C1 exon
chr11:102351692-102351793
Coord A exon
chr11:102351794-102353198
Coord C2 exon
chr11:102353199-102353381
Length
1405 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TGACCCTTGGTGTTTCTCATGCT
3' ss Score
-0.41
Exon sequences
Seq C1 exon
CTGCGGGCACCGCCCCTGTTGCCCCCGCCCCCGCCAAGGCCTCCAAACTTTTCCAGCTCAGGCCCAAATCTCCTCAGGTGATGCCTGTTGAAGAATTCGAAG
Seq A exon
GTAAGAGGGAGGCCGTGGGGTGGATTAGTCCTCCTCCAGCATTTCTTCCCCTACTTCCAAAAAAAAGTGCCGGACGAGGACCAGTGATGCCCAGCTCAGAAAACCCTCCCAGAGTAGCTGGGTCAAGGTGAAGTGGAGCCTGTCTCCCCTCTGGTGCTCCTTCCCCGAGGGAGCAGGGGGCAGGCATGAGTCAGAAGCACAGTGGGCAGGCACAGGGCAGGCAGAGCAGCTGCCAGAAATAGCCTGTCCTGGCTCCCCTGGGAGGTGTGTCCCAGCGGCTCATCTTGGTGGAAGCAAGATCGGGGACACGGGGTCACCGACAGTATCCTTGGGACACCTGGAGGATGTCTCACCTTCTCACTGTCCCTGGAGGGACAAGGTGACGGGGACAGGAGGCCATGGGGCGGGAAAGCCACCCAGCTCCTCCCGGGCATAGCTCAGAGGCTCTTTTCTTCAAGGTCTCCCACGTCCTTGACCCTGACACCTGGTCAGTCCTCCCTTCTCCCATCACAAAGGGAAGTGTGGCTCCTCTAGGGATACACAGATGGTGTCTCACAGAGGGCATCCTTCCTTGTTCAAGGGAATGCTGAACCTCTTAGGAGGGGACACCAAGGGACGGCCCCCATCTGTGGCAGGGAAGGTGACCCTCCTCACCAAACTCCACCTCCCTTGATGACGTCAAGGGAGTCACCTCCAATCCCTGGGGGCCTCCCCTTTGGGGGTCACAGGTGCCTCCAGTGAGAGTCAGAAGCTGGGCCAGGGCTGGCCTTGGAGGTCAAGGCGAGAATCTCAGGGCACAAAGCTTAAGGCAGCACTTGCTATCGGGGTCCTGCAAGAGCAGGCGCTCTGCTGCCAAGCACATCTGCAGAACAGCCCAGGCTAATAAGAAAGGGTCCTGCAGGTGGGGGTTTCCTCGAACCATCTTCCAAAGCAGCACGGGGAGGAAGTTCCTGGTCCTTCCCACCTCTGGCGTACATGCATGCATCTGCCCTTCACTGAATCACTGGGATACTGTGGTGAGCGCAATGTACCCAGGCACCGCCCTCCCTGAGCTCACCACCCGATGGCATGACCCATCCTCCCTGCATGGATCATTTCTAATCACCCCAGCATCCCTCCAGAGAGCGCTTCACCCCGGTACCCAGCCAGGGCTTCAGCGGGTGCTCCCTGGTGCCCTGCCCTCGGGGCCAGGTGGGAATTTGTGGGCCGGGCCCATGCTGGTTCTCATTCTGGTTCAAAGCTAGCAGGACCATCCCTCCCCAAATGGCACAGGAGTGTTGGAGGCCTGGGGCACTTTCCTGTGCCAGGTACCTGCCGCCCCTGCCTCAGTTTCCCTGACTGCATGGGGGAGGGGTCGCAGGAAGGCACCGTCTCCATTTGCTCTCTGACCCTTGGTGTTTCTCAT
Seq C2 exon
GCTCGGCCGGCCCAGACTGCGAGTGCTACGGCCACTCCAACCGCTGCAGCTACATTGACTTCCTGAATGTGGTGACCTGCGTCAGCTGCAAGCACAACACGCGGGGCCAGCACTGCCAGCACTGCCGTCTGGGCTACTACCGAAACGGCTCTGCAGAGCTGGACGACGAGAACGTGTGCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007235:ENSBTAT00000064483:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005319=Laminin_EGF=WD(100=87.1)
Main Inclusion Isoform:
ENSBTAT00000009516fB4828
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCCAAGGCCTCCAAAC
R:
CGTTCTCGTCGTCCAGCTCT
Band lengths:
246-1651
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development