MmuINT0111293 @ mm9
Intron Retention
Gene
ENSMUSG00000035513 | Ntng2
Description
netrin G2 [Source:MGI Symbol;Acc:MGI:2159341]
Coordinates
chr2:29052502-29054435:-
Coord C1 exon
chr2:29054334-29054435
Coord A exon
chr2:29052670-29054333
Coord C2 exon
chr2:29052502-29052669
Length
1664 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CTCCCACTTGGCTGGTCCAGACT
3' ss Score
3.94
Exon sequences
Seq C1 exon
CTGTAGCTATCTCTGTCGCTGTCCCTTCCCAAGCCAAGGACTCTACGCTTTTCGAGCTCAAGCCCAGATCTCCTCAGGTGATACCCATTGAAGAATTTCAAG
Seq A exon
GTAAGAAGGTGGCCTGAGTCAGGCTTCCCACCTCCTCTCCAGTTTGCCGGAGAAAGACGGTGCAGGACAGAACTAGCTTGTTGGTATCAACTCAGAAAACCCTCCCAGAATAGCTGGGTCAAGGTTAAGCTGAGTCTCTCCAGCCCCAAGGGAGCTAAAAGCTGGGATGAGTCAGAAGCCAACTCAGGCACAGTGGGCAGGCACATGGCAGGAGAAGCAGCTGCCACAAATAGCCTGTCCTGGCTCCCCTGGGAGGTGTGGCCCAGGGGCTTGTCTTGGTTGGAATGGAATCTGGGACACCTGGGTCACTCTTTGGGGGCGTTTGGAGGATGTTTCCCGGTGTCTCAGGAGGACCAAGGTAAAGTCGGGTCAGGTAGACCCATGGGTGTTTCTCCAGACTCTCGTGTGCCTTTGACCATACGGAGACCAGGTCAGCACCACCCTGATCATCACAAGAGAGGGAGCTGAGGTCCTCTAGGGATAGCTGCTCAGAAGGTGGCCAGCATTCATGTGTAATGGCATGGGGGTATTGAGTCCCTTAGAAGGGACACAATGATGGTCTATCCCGCTGAAGGAAAAGTGGCCCTTCAGATTGACCTCTGCTATTCCAGGTCCTTGACCTAGGCAGTCATGGGAGTTGATAGAGTCATTTGGAAGGTCAGCCTGAGAACCTGTGTTGAATATGTAGCTTGGTTGGTAAAGTGCGCTCGCACAGGAAGAAACTGCTCTGGAGTCTCAGCACAGCATCAACTGGGTGTGGACCTGCATGACTGTAATTCCAGGTCAGAAGACCAGAAGTTCAAGGTCATTCTTAGCTAATTATTGAGTCCAAGATCAGCCTGAACTACCCAAGACCTGGTCTTTTTATTACTACTATTAATCATTCCATTCATTTACATCTCAAATGATATCCCACTTCCCCGTTACTCCTCCACCAATCCCGAGACCCTGTCTTAAAACAAAACCAAAAACATTTGTGGGAGGGAGAGTAAAAAGTCCCACAATGGCTCAGAGGTGGCTTTCCTTGGTTTAAACTGAACAGTGAGATTCAAAAGCTGGGCTGAGACCAGAGGAAACCAGGAGATAGGTGCCCAGTGTCTTGCTGAAACTAGCAATTCAGTGCCAATCAAACTTGTGGGAGGTCCAAGCTAGTAAGAAGATTGGGTCCTGTAGGAATTTGCAGAGACAGTAGCCAGTTTCCCTCTTCCAAAGCAGCATGGGAAGAAGGTTCTGTCCCATGCCATCATATCCAGATCCCTGTATGACTCCATTCATCCATAGGCCCTCAAGGGAACTCTAGCCAGCCTGGAACCTTTGCATTCCCTCTGTAAATGCAGCCTGCAGCATGACCCTGCCCTCCTAGTCAGCCTCAGCATGCAGGCATCCTTCAGACAGCTCCTTGCCCTGAGACCTAGTCAGATGTTAGCATGCCCTTGCCTCACTGACTGTCTGCCCACAGGCCTCCTGGGGACTCAAAGCTGACAGGGCAAGCCTTAGCCACATGCTACAGAAGTGTCCTGGACCTGAGACCCCGTCCAGATCCCCCTCCCAAAGATGCTTCCTGCCACCTTCCCTGTATATTCCTGGGTATGCCTTTCTCTGTATCCCTGTTTTCCCCCAAATGCTCACTGACCACTGGCATTTCTCCCACTTGGCTGGTCCAG
Seq C2 exon
ACTGCGAGTGCTACGGCCACTCCAACCGTTGCAGCTACATTGACTTCCTGAACGTGGTGACCTGCGTCAGCTGTAAACACAACACTCGAGGCCAACACTGTCAGCACTGCCGCCTGGGCTACTATCGCAATGGCTCCGCAGAGCTGGATGATGAGAACGTCTGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035513-Ntng2:NM_133501:6
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005319=Laminin_EGF=PD(93.8=78.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTAGCTATCTCTGTCGCTGT
R:
CAATGCAGACGTTCTCATCATCC
Band lengths:
270-1934
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: