HsaEX1026287 @ hg38
Exon Skipping
Gene
ENSG00000196358 | NTNG2
Description
netrin G2 [Source:HGNC Symbol;Acc:HGNC:14288]
Coordinates
chr9:132230572-132235719:+
Coord C1 exon
chr9:132230572-132230595
Coord A exon
chr9:132231295-132231568
Coord C2 exon
chr9:132235651-132235719
Length
274 bp
Sequences
Splice sites
3' ss Seq
GGCACGGTCTCTCCTTTCAGCCT
3' ss Score
7.91
5' ss Seq
GTCGTAAGT
5' ss Score
9.9
Exon sequences
Seq C1 exon
GTGCCACTGCAGGTTCCTTTGGCA
Seq A exon
CCTTGCAAACCCCTCCCCCTGGGAGGTCGCCATCTGCTCTGCGAGGCAGCAGGAGAGGACTGGCCAATGTCAAAGAGCCAGCCGGGAGCAGACCCCAAATCTCAGAGATGCTTCTGGGGTGCACCGTCACCCTCCACCAGGGCTCTGTGGGGCCCCACATCCCACCCAAGTTGTCCCTCCCGGACCCAGGGGGCCCCTGGCTGGGAAGCCAGTGAGCCGAGAGGGCGCCAGAAAGAAGCTGGACCCTGCAGGGACGCTGGTCTGCACAGCCGTC
Seq C2 exon
AGTGGACCAGGCCATCTACGGCTGCCCCTCTCTCGAGCAGGTGGTCCCAGGTGGCCTCCCGTGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196358_MULTIEX1-2/5=1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.381 A=0.704 C2=NA
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(0.1=0.0)
A:
NO
C2:
NA
Main Inclusion Isoform:
ENST00000393229fB21471
Main Skipping Isoform:
ENST00000393229fB21472
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains