MmuEX0032712 @ mm10
Exon Skipping
Gene
ENSMUSG00000052533 | Nup188
Description
nucleoporin 188 [Source:MGI Symbol;Acc:MGI:2446190]
Coordinates
chr2:30302001-30304149:+
Coord C1 exon
chr2:30302001-30302045
Coord A exon
chr2:30303660-30303913
Coord C2 exon
chr2:30304057-30304149
Length
254 bp
Sequences
Splice sites
3' ss Seq
AGTACTTGCTTCTCTTCCAGGGG
3' ss Score
8.63
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
ACAGTCCTGCAAGATGAGAGGCAGAGCCAGGCCTTAACCCTGAAG
Seq A exon
GGGCCTTCGTTGGGTTCCTGGCACCCGTGGCAGCTCAGGAATGCCTTACCTCTGGCTCCAGATCCCTCCTTGCCCTTCTTCTTCTGGCCTTGGTAGGCACCTGTACACATGTGGTATACACAAACAAAAATAAAATGAAGTGAATTTTAAACTACTTGTTTCTTGTGTATACCTCCAGAGGTCAGAGAACAGCTTGTGGAAGTTGGCTCTCTCCTTCCACCATGTGGGTCCTAGAGCTTGAACCAGGGTGCCAG
Seq C2 exon
ATTGCAGATTATTATTATGAAGAAAGAACCTGCATTCTTCGTTGTGTCTTACACCTTCTGACATATTTCCAAGATGAACGCCATCCATACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052533_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.035 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104874=Nup188=FE(13.7=100)
A:
PF104874=Nup188=PD(2.9=9.4)
C2:
PF104874=Nup188=FE(3.3=100)
Main Inclusion Isoform:
ENSMUST00000064447fB2790
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCTGCAAGATGAGAGGCA
R:
CCTGTATGGATGGCGTTCAT
Band lengths:
136-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types