MmuEX0033134 @ mm9
Exon Skipping
Gene
ENSMUSG00000043964 | Orai3
Description
ORAI calcium release-activated calcium modulator 3 [Source:MGI Symbol;Acc:MGI:3039586]
Coordinates
chr7:134913329-134918664:+
Coord C1 exon
chr7:134913329-134913730
Coord A exon
chr7:134914248-134914392
Coord C2 exon
chr7:134917071-134918664
Length
145 bp
Sequences
Splice sites
3' ss Seq
ATGTCAGCTAACGGTCCCAGCAG
3' ss Score
-1.42
5' ss Seq
AAGGTGCTG
5' ss Score
4.05
Exon sequences
Seq C1 exon
CCAGTTCCTGTTTCGGCCCCTGGGCCTTCTAGACGCGTCCGTAACTGTTCCCGCTGGGTCTGCCTTGCCACCCAGGATGGGGTCCCACCCGCGCTTGGGCCGTCCCTTCTTGGGGATACAAGGCGCCTCGGCCCCTCCTTGACCATCTGCGCTTGTGGTGTAACTGCTCTCAGGATGAAGGGCGGCGAGGGGGACACGGGCGAACAGGCCCCGCTGAACCCGGAGGTGGACAGCCCCGCGGGCTCAGCCACGTACCGGGAGTTCGTGCACCGCGGCTACCTGGACCTTATGGGGGCCAGTCAGCACTCTCTGCGGGCGCTCAGCTGGCGCCGCCTCTACCTCAGCCGGGCTAAGCTCAAAGCCTCCAGCCGCACATCTGCTCTGCTGTCGGGCTTCGCCATG
Seq A exon
CAGTGGCCCCGGGAAGTGGAACTGAAGATTCCAGAGTGTGGCCTGCAGATGTGTCCTGGTTCCTCCCTACTTAGGGCCAGCTGTGCGGCCCCAAGTCGACATCCACTCCAGTTGCCATCTTTAGGAAGTTGTGACATCATAGAAG
Seq C2 exon
GTGGCCATGGTGGAGGTACAGCTGGAGAACGATCATGAATACCCACCAGGCCTGCTGGTGGCATTTAGTGCCTGCACCACTGTGTTAGTAGCTGTGCACCTCTTTGCACTGATGGTCTCCACATGTCTGCTGCCCCATATTGAAGCCGTGAGCAACATCCACAATCTCAACTCTGTCCACCAGTCACCACACCAACGACTGCACAGATACGTGGAGCTTGCCTGGGGCTTCTCTACTGCCTTGGGTACCTTTCTCTTCCTGGCTGAAGTTGTTCTGGTGGGCTGGGTCAAGTTTGTGCCCATTGGGGCACCCATGGGTAAACCAGCTCCTGTTGTACCTATGTCCCAGGTGCCACCTGTGACTGTCTCCCTTAGTTTAGCTTCTAACCTCACACCATCCTCTGCTTCTATTACCACATCACAACAGCCTTCCAAAGCCTGTCCACCCCGGCAAGTGTGTGATAGTGCTCATGGACCAGGCTGGCAGGCAGCTATGGCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043964_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.254 A=0.000 C2=0.126
Domain overlap (PFAM):
C1:
PF078567=Orai-1=PU(14.6=44.7)
A:
PF078567=Orai-1=PD(32.1=34.7)
C2:
PF078567=Orai-1=PD(84.5=91.6),PF105414=KASH=WD(100=24.2)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCTGGACCTTATGGGGGC
R:
ACCATCAGTGCAAAGAGGTGC
Band lengths:
243-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: