MmuEX0033155 @ mm10
Exon Skipping
Gene
ENSMUSG00000026761 | Orc4
Description
origin recognition complex, subunit 4 [Source:MGI Symbol;Acc:MGI:1347043]
Coordinates
chr2:48917165-48927247:-
Coord C1 exon
chr2:48927096-48927247
Coord A exon
chr2:48923709-48924248
Coord C2 exon
chr2:48917165-48917338
Length
540 bp
Sequences
Splice sites
3' ss Seq
CTCATGGTTATGTTTTTCAGTAT
3' ss Score
5.73
5' ss Seq
GGGGTAAGC
5' ss Score
7.79
Exon sequences
Seq C1 exon
GTGACCGGACTAGCAGTTGCCCAGTGATCTTCATACTGGATGAATTTGATATTTTTGCTCATCAGAAAAATCAAACACTCCTTTATAATCTTTTTGACATTTCTCAATCTGCACAGACACCAGTAGCAGTTATTGGACTTACATGTAGATTG
Seq A exon
TATATTGTAAGAAGATGAGAAATACTCGAAGTTCATTTGCATTTAGTTCCACCTTAAAAATAGACAATAATTGGATGGAGAAATGGCTCAGCCTGTAAGAGCATTTGTTCTCATTGGAAAGGATGAGAACTCAGTCCTTCCACTCATCACAGCAGCTTGATAATACTGTAGTTCATCAAATAGAATTTTGCTCCATTGTACATCATGTTTCTTGAAGTTCTTAAACAAAATCATGAAGATATCTGAATTTTTGTTAATGGTAGCAAATCTCATAGCATTTTGTTACCTCAGATTTTTTTGTGAATTTTTTTGTAGGCTGTGCAGAATTCCACACTGGTGTGCTTAATGTCTCTCTGATCAGGAACAGTAGCTGTTTGTATGTCCTTAGTAGGTTTGAGAATGTTAGCACTCGATAATGAGGCCAAAATGCAATCACAATGATACTGGTGCCTAGAAAGGAATCATTTAGTTCAGTAGTTATCAATTTGTGGTTTGCAACCCATATCGGGGTTGAACAACGCTTCTACAGAGATCAAAGGG
Seq C2 exon
GATATTTTGGAACTCTTAGAAAAGAGAGTGAAGTCACGATTTTCTCACCGGCAGATACATTTAATGAATTCATTTGATTTTCCACAATATTTGAAAATATTTAAAGAACAGTTATCTCTACCTGCAGAATTCCCAGATAAGGCTTTTGCTGAGAGATGGAATGAGAATGTTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026761_MULTIEX1-1/3=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=PD(28.6=86.3)
A:
NO
C2:
PF146291=ORC4_C=PU(14.1=46.6)
Main Inclusion Isoform:
ENSMUST00000028098fB2838
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCGGACTAGCAGTTGC
R:
GTGAACATTCTCATTCCATCTCTCA
Band lengths:
326-866
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types