RnoEX0062386 @ rn6
Exon Skipping
Gene
ENSRNOG00000005021 | Orc4
Description
origin recognition complex, subunit 4 [Source:RGD Symbol;Acc:735212]
Coordinates
chr3:33049733-33053647:-
Coord C1 exon
chr3:33053496-33053647
Coord A exon
chr3:33050722-33050763
Coord C2 exon
chr3:33049733-33049906
Length
42 bp
Sequences
Splice sites
3' ss Seq
CTCATGGTTATATTTTTCAGTTA
3' ss Score
6.32
5' ss Seq
CATGTAATT
5' ss Score
1.05
Exon sequences
Seq C1 exon
GTAACCGGACTAGCAGTTGCCCAGTGATCTTCATACTGGATGAATTTGATCTTTTTGCTCATCAGAAAAACCAAACACTCCTTTATAATCTTTTTGACATTTCTCAATCTGCACAGACACCAATAGCAGTTATTGGCCTTACATGTAGACTG
Seq A exon
TTAATTTTAAGAAGATCAGAACTTCTCAAAGTTTATTTTCAT
Seq C2 exon
GATATTTTGGAACTCTTAGAAAAGAGAGTGAAGTCACGATTTTCTCACCGGCAGATACATTTAATGAATTCATTTGATTTTCCGCAATATTTGAAAATATTTAAAGAACAATTATCTCTACCTGCAGAATTCCCAGATAAGATTTTTGCTGAGAAATGGAATGAGAATGCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005021-'15-18,'15-17,16-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=PD(28.4=86.3)
A:
NO
C2:
PF146291=ORC4_C=PU(14.1=46.6)
Main Inclusion Isoform:
ENSRNOT00000006937fB10100
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCATCAGAAAAACCAAACACTCC
R:
GCCGGTGAGAAAATCGTGACT
Band lengths:
148-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]