MmuEX0033220 @ mm9
Exon Skipping
Gene
ENSMUSG00000029822 | Osbpl3
Description
oxysterol binding protein-like 3 [Source:MGI Symbol;Acc:MGI:1918970]
Coordinates
chr6:50320122-50406169:-
Coord C1 exon
chr6:50405824-50406169
Coord A exon
chr6:50378328-50378419
Coord C2 exon
chr6:50320122-50320357
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTGTTTCCCACTTTTGTCAGGTC
3' ss Score
8.59
5' ss Seq
CAGGTATAG
5' ss Score
8.73
Exon sequences
Seq C1 exon
AGGCTCCTCCTCTTAGCTCCCTCCCCTCGCTCCAGCTCTTCAGCTAATTGCCCGGCAGCGCGCGCCCTAAAGTTCTAGGCGAAGTATTGAGAACTGGTCGCGGGGATCGCACACCGGCCAGTAGCAGGGGACCAGGGACCCCGGCACCAGGAGAGCTGGTGCACTGCGCGGGCTCTCGCCCACCATCTGTCTGCGAGCAGCGCTCGGCGCCCCAGTCTCCTGCGGCTGGTGCTGGAACTGCCGTCGGCTGAGACTTGCAGGGACCCGAGAAGCCCGGTTTGCGTCCTTCTCGGTCTGAAGCACGCACTGGGGAATCGAGAAGCGTCCCCAGCAGCGGAACACTTAG
Seq A exon
GTCTGTCCTGTGTCAGCGAAGACCACGAGAAGAGAGTCATGCAACATTGATCATACTGCCTGCCTTCTTTCGGAAGTATTGAACTTATTCAG
Seq C2 exon
AGATTTCCTCTGAGACTTCCAGAATGGCTTCTAAACACATTGGGTAAGAGCTGGCACCTGCCTGCGAGGACTTCATACTCTCAGCTCCACCATCTTCCCATGGCATTTTGACTGCGCTGAGCCCAAAGGACCAGCTCTTCACAATGAGTGACGAGAAGAATCTCGGTGTGTCTCAAAAGTTGGTTTCACCTTCAAGAAGCACAAGTAGTTGCTCCTCCAAGCAAGGAAGCCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029822_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.347
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGCGTCCTTCTCGGTCTG
R:
ATGGGAAGATGGTGGAGCTGA
Band lengths:
171-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: