MmuEX0033220 @ mm10
Exon Skipping
Gene
ENSMUSG00000029822 | Osbpl3
Description
oxysterol binding protein-like 3 [Source:MGI Symbol;Acc:MGI:1918970]
Coordinates
chr6:50370123-50456170:-
Coord C1 exon
chr6:50455825-50456170
Coord A exon
chr6:50428329-50428420
Coord C2 exon
chr6:50370123-50370358
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTGTTTCCCACTTTTGTCAGGTC
3' ss Score
8.59
5' ss Seq
CAGGTATAG
5' ss Score
8.73
Exon sequences
Seq C1 exon
AGGCTCCTCCTCTTAGCTCCCTCCCCTCGCTCCAGCTCTTCAGCTAATTGCCCGGCAGCGCGCGCCCTAAAGTTCTAGGCGAAGTATTGAGAACTGGTCGCGGGGATCGCACACCGGCCAGTAGCAGGGGACCAGGGACCCCGGCACCAGGAGAGCTGGTGCACTGCGCGGGCTCTCGCCCACCATCTGTCTGCGAGCAGCGCTCGGCGCCCCAGTCTCCTGCGGCTGGTGCTGGAACTGCCGTCGGCTGAGACTTGCAGGGACCCGAGAAGCCCGGTTTGCGTCCTTCTCGGTCTGAAGCACGCACTGGGGAATCGAGAAGCGTCCCCAGCAGCGGAACACTTAG
Seq A exon
GTCTGTCCTGTGTCAGCGAAGACCACGAGAAGAGAGTCATGCAACATTGATCATACTGCCTGCCTTCTTTCGGAAGTATTGAACTTATTCAG
Seq C2 exon
AGATTTCCTCTGAGACTTCCAGAATGGCTTCTAAACACATTGGGTAAGAGCTGGCACCTGCCTGCGAGGACTTCATACTCTCAGCTCCACCATCTTCCCATGGCATTTTGACTGCGCTGAGCCCAAAGGACCAGCTCTTCACAATGAGTGACGAGAAGAATCTCGGTGTGTCTCAAAAGTTGGTTTCACCTTCAAGAAGCACAAGTAGTTGCTCCTCCAAGCAAGGAAGCCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029822_MULTIEX2-1/3=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.468
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGCGTCCTTCTCGGTCTG
R:
ATGGGAAGATGGTGGAGCTGA
Band lengths:
171-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types