RnoEX0062500 @ rn6
Exon Skipping
Gene
ENSRNOG00000010011 | Osbpl3
Description
oxysterol binding protein-like 3 [Source:RGD Symbol;Acc:1564287]
Coordinates
chr4:80107786-80202321:-
Coord C1 exon
chr4:80202221-80202321
Coord A exon
chr4:80172037-80172128
Coord C2 exon
chr4:80107786-80107886
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTTTCACTTTTCTTTGTCAGGTC
3' ss Score
10.47
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGCTGAGACTTGCTTGGGACCCGAGAAACCGGGTTTGTGTCCTTCCCGGTCTGAAGCAGGCACAGGGGAACCGAGCAGTGTCTCCAGCAGTGAACACTCAG
Seq A exon
GTCTGCCCTGTGCCAGCAAAGAACGAGAGAAGAGATTGCTGCAACATTGATAATACTGCTCGCCTTCTTTCAGAAGCACTGAACTTATTCAG
Seq C2 exon
AGATTTCCTCTGAGACTTCCAAAATGGTTTTCAGACACACTGGATAAGAGTCAGCAACTTCCTGCGAGGACTTCATACTTTCAGCTCTACGTCTTCCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010011-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGAGACTTGCTTGGGAC
R:
CGCAGGAAGTTGCTGACTCTT
Band lengths:
167-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]