MmuEX0033416 @ mm9
Exon Skipping
Gene
ENSMUSG00000006675 | P4htm
Description
prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum) [Source:MGI Symbol;Acc:MGI:1921693]
Coordinates
chr9:108484173-108485274:-
Coord C1 exon
chr9:108485178-108485274
Coord A exon
chr9:108484413-108484510
Coord C2 exon
chr9:108484173-108484335
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTCTCTGGGTCTTCCCTCAGGGC
3' ss Score
10.43
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
GTCCTGGCCCAGACTCGCCTGGGAAATGGACGGTGGATGACTCCAGAGAACATTCAGGAGATGTACTCTGCAATCAAAGCAGACCCTGACGGTGATG
Seq A exon
GGCCCGATGTGACAGAAACCAGGTTCATCTGACCCGAGTCCAGGTGGGGACACATGGCCCCCCAGTGCCTGAGGCCAGGGGCTGCCGCTACCTTTGGG
Seq C2 exon
GCGTGCTGAGTCTGCAGGAATTTTCCAACATGGACCTCCGAGACTTCCACAAGTACATGAGGAGCCATAAGGCAGAATCCAATGAGCTGGTGAGGAACAGCCACCACACATGGCTCCACCAGGGAGAGGGAGCACATCACGTCATGCGTGCCATCCGCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006675_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.182 A=1.000 C2=0.164
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(30.5=100)
A:
PF134991=EF-hand_7=PD(6.0=54.5)
C2:
PF134991=EF-hand_7=PD(10.5=20.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAATGGACGGTGGATGAC
R:
ACCAGCTCATTGGATTCTGCC
Band lengths:
168-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types