BtaEX0025660 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005490 | P4HTM
Description
Bos taurus prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum) (P4HTM), mRNA. [Source:RefSeq mRNA;Acc:NM_001076115]
Coordinates
chr22:51559089-51560698:-
Coord C1 exon
chr22:51560602-51560698
Coord A exon
chr22:51559338-51559425
Coord C2 exon
chr22:51559089-51559251
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTCTCTGGGTCTTCCTGTAGGGC
3' ss Score
9.93
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
GTCCTGGCCCAGAACCGCCTGGGGAATGGACGGTGGATGACTCCAGAGACCATTCAGGAGATGTACTCTGCCATCAAGGCTGACCCTGACGGGGATG
Seq A exon
GGCCTGATGTGACAGAAGCCAACTTCATCTGACCCGAGTCCAGGTTGGGGGACAGGTGCACATGGCCCCCCAGTGCCTGAGGCCAGGG
Seq C2 exon
GAGTGCTGAGCCTGCAGGAGTTCTCCAACATGGACCTTCGCGACTTCCACAAGTACATGAGGAGCCACAGGGCGGAGTCCAGCCAGCTGGTGCGGAACAGCCACCACACGTGGCTCTACCAGGGCGAAGGCGCCCACCACGTCATGCGCGCCATCCGCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005490_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=1.000 C2=0.018
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(37.2=100)
A:
PF134991=EF-hand_7=PD(8.7=81.8)
C2:
PF134991=EF-hand_7=PD(12.8=20.0)
Main Inclusion Isoform:
ENSBTAT00000007217fB4957
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGGACGGTGGATGACTCC
R:
CTGTTCCGCACCAGCTGG
Band lengths:
174-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development