RnoEX0062916 @ rn6
Exon Skipping
Gene
ENSRNOG00000020249 | P4htm
Description
prolyl 4-hydroxylase, transmembrane [Source:RGD Symbol;Acc:1311848]
Coordinates
chr8:117368620-117369853:-
Coord C1 exon
chr8:117369757-117369853
Coord A exon
chr8:117368860-117368957
Coord C2 exon
chr8:117368620-117368782
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTCTCTGGGTCTTCCCTCAGGGC
3' ss Score
10.43
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
GTGCTGGCCCAGACTCGCCTGGGAAATGGACGGTGGATGACTCCGGAGAACATTCAGGAGATGTACTCTGCTATCAAGGCAGACCCCGATGGTGACG
Seq A exon
GGCCCGATGTGACAGAAACCAGGTTCATCTGACCCGAGTCCAGGTGGGGACACATGGCCCCCCAGTGCCTGAGGCCAGGGGCTGCCGCTACCTTTGGG
Seq C2 exon
GAGTGCTGAGTCTGCAGGAATTTTCCAACATGGACCTTCGAGACTTCCACAAGTACATGAGGAGCCATAAGGCAGAATCCAGCGAGCTGGTGAGGAACAGCCACCACACATGGCTCCACCAGGGCGAGGGAGCCCATCACGTCATGCGTGCCATCCGCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020249_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=1.000 C2=0.145
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(30.5=100)
A:
PF134991=EF-hand_7=PD(6.0=54.5)
C2:
PF134991=EF-hand_7=PD(10.5=20.0)
Main Inclusion Isoform:
ENSRNOT00000027466fB10212
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGAAATGGACGGTGGATG
R:
AGCTCGCTGGATTCTGCCTTA
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]