MmuEX0035212 @ mm10
Exon Skipping
Gene
ENSMUSG00000039934 | Gsap
Description
gamma-secretase activating protein [Source:MGI Symbol;Acc:MGI:2442259]
Coordinates
chr5:21242805-21247000:+
Coord C1 exon
chr5:21242805-21242882
Coord A exon
chr5:21245932-21246070
Coord C2 exon
chr5:21246899-21247000
Length
139 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTTTTGCTTGGCTAGCCC
3' ss Score
6.03
5' ss Seq
AAGGTGACT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GGAGTTTGTGTATGTGTTACAGCCCTAAGTCTGACTCACGGGAAGAAATCACATATTCAGTGTTCTACCTCCATAAAG
Seq A exon
CCCTTCTCTCACCTTGGCCATTGACTCTTTAACAACCCTGGAATGGTCTATATAAAAACAACACTCCTCAGCAAAGGCAGCACATAGCCCTCCTATTCTGTGGCACTACTTCTGACAATGAAGTCAGTGATTCTTGAAG
Seq C2 exon
GATACAGAAAGATCTTCACTGCAGCTCCTGGAAGTGCTGACTCACAGGTCACAAACGGTGCTGACTCACAGGTCACAGACGGCATCGCTTTCCTCAACCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039934_MULTIEX4-8/8=7-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.038
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000036031fB3016
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTTGTGTATGTGTTACAGCCC
R:
AAGGTTGAGGAAAGCGATGCC
Band lengths:
178-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types