MmuEX0035212 @ mm9
Exon Skipping
Gene
ENSMUSG00000039934 | Pion
Description
pigeon homolog (Drosophila) [Source:MGI Symbol;Acc:MGI:2442259]
Coordinates
chr5:20748623-20752818:+
Coord C1 exon
chr5:20748623-20748700
Coord A exon
chr5:20751750-20751888
Coord C2 exon
chr5:20752717-20752818
Length
139 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTTTTGCTTGGCTAGCCC
3' ss Score
6.03
5' ss Seq
AAGGTGACT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GGAGTTTGTGTATGTGTTACAGCCCTAAGTCTGACTCACGGGAAGAAATCACATATTCAGTGTTCTACCTCCATAAAG
Seq A exon
CCCTTCTCTCACCTTGGCCATTGACTCTTTAACAACCCTGGAATGGTCTATATAAAAACAACACTCCTCAGCAAAGGCAGCACATAGCCCTCCTATTCTGTGGCACTACTTCTGACAATGAAGTCAGTGATTCTTGAAG
Seq C2 exon
GATACAGAAAGATCTTCACTGCAGCTCCTGGAAGTGCTGACTCACAGGTCACAAACGGTGCTGACTCACAGGTCACAGACGGCATCGCTTTCCTCAACCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039934-'14-14,'14-13,15-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTTGTGTATGTGTTACAGCCC
R:
AAGGTTGAGGAAAGCGATGCC
Band lengths:
178-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: