MmuEX0035221 @ mm10
Exon Skipping
Gene
ENSMUSG00000039934 | Gsap
Description
gamma-secretase activating protein [Source:MGI Symbol;Acc:MGI:2442259]
Coordinates
chr5:21229161-21247000:+
Coord C1 exon
chr5:21229161-21229246
Coord A exon
chr5:21242805-21242882
Coord C2 exon
chr5:21246899-21247000
Length
78 bp
Sequences
Splice sites
3' ss Seq
CAAATACCTTCTTTTCCCAGGGA
3' ss Score
7.96
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
ACTTGTCAACTTTGGATATGACTATCGTCAAGACCGTGAGAAGCTGTGCAATCAGCCTTCTCTCTGCATTTTTACCAACCATACAG
Seq A exon
GGAGTTTGTGTATGTGTTACAGCCCTAAGTCTGACTCACGGGAAGAAATCACATATTCAGTGTTCTACCTCCATAAAG
Seq C2 exon
GATACAGAAAGATCTTCACTGCAGCTCCTGGAAGTGCTGACTCACAGGTCACAAACGGTGCTGACTCACAGGTCACAGACGGCATCGCTTTCCTCAACCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039934_MULTIEX4-7/8=6-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.038
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000036031fB10898
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTATCGTCAAGACCGTGAGA
R:
AAGGTTGAGGAAAGCGATGCC
Band lengths:
169-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types