GgaEX0012041 @ galGal4
Exon Skipping
Gene
ENSGALG00000008312 | GSAP
Description
gamma-secretase activating protein [Source:HGNC Symbol;Acc:HGNC:28042]
Coordinates
chr1:12503644-12511291:+
Coord C1 exon
chr1:12503644-12503729
Coord A exon
chr1:12507824-12507901
Coord C2 exon
chr1:12511214-12511291
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTTTGTCTTCTTAGGAG
3' ss Score
10.8
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ACTTGTGAATTTTGGATACAATGACTGTGAAGACCGAGATGTTCCACCCAAGTCTTTGAATCTTCAGGTTTTTACAAATAAAGCAG
Seq A exon
GAGGACTGTGTGTGTGTTGTAGTCTTCCTTCGGATATTCCTGGGGAAATATCATACTCCATATATTTTTTACATAAAG
Seq C2 exon
GGTTTAGCAAAACTTTTACAGCTTCTCTAGAAAGACCAGAAACTCCTCAATTGAAGGAAGTGGCCTTTTTGAATCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312_MULTIEX3-2/6=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000013530fB1351
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATACAATGACTGTGAAGACCGA
R:
CAAGATTCAAAAAGGCCACTTCCT
Band lengths:
151-229
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]