GgaINT0120673 @ galGal4
Intron Retention
Gene
ENSGALG00000008312 | GSAP
Description
gamma-secretase activating protein [Source:HGNC Symbol;Acc:HGNC:28042]
Coordinates
chr1:12503644-12507901:+
Coord C1 exon
chr1:12503644-12503729
Coord A exon
chr1:12503730-12507823
Coord C2 exon
chr1:12507824-12507901
Length
4094 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
TTTCCTTTTTGTCTTCTTAGGAG
3' ss Score
10.8
Exon sequences
Seq C1 exon
ACTTGTGAATTTTGGATACAATGACTGTGAAGACCGAGATGTTCCACCCAAGTCTTTGAATCTTCAGGTTTTTACAAATAAAGCAG
Seq A exon
GTAATGAATAAGTACAGATCTTGTGATACTACAGTGTTCTCCACATGTAATTGTTATATAGTATAGTCATAGTTGATAACTAAGAATTTTTTTAAGACATTATTATATACATTTTTTTTTCTTTTTGTTTTTTTATACAAGCGTGAGATTTGTTTAGTCCTTAGATTATACTTGACATAAAACTGAGGAGAAGGCAGCAATTGTGCACTACTTATTATTGTTGAGTTTATTTACCCTTTGAAAGCTGCATGGCAAGTTGAGCTAGAGACTAACTTGGGTTTTATATATTAACACTAGTAATAAAGCAGTCATCCAGAAATTTTCTGGTAGCCTAGGTCCAAAGAACTGATGTAGTGTGTACATACAGCAAAACAGGTCCAGCATGTGATACTAAATGTAGGACGTAATACTTAATGGTTTGATATGTATATGTTGTGATGTTCCTGAAACCTTTAGGATTTAGGACTCTCCCTGCATCCTAATGCATGTTATGAGTTGATGGTTTTTTTTTAATTAAATACTGGGCTCAAGAGACATCTGTTCATCACAGATGCCTGCAATTTCAATTTCTAAATTAGACCATACGGCCAAGCAGAGATGGTGTATGATTAACCTTTAAATGGTCTGCAGAGTTATCTAGAGGTGTGATGTGTTGCAGAAATGCTTTCTCATCTTGCTTTTTAAGGATGCTTTTATGCATGCAGGTGAATTGCTGAGGCTGTACTGAGGTGCCTATTAGTGCAAATAAAGTGAAATATGGCTTTCTTTTTTCATACAAAGGCAGACGATACAGTTAAAAAGATTAGAGGGAAGGAATTAGAGGTAAGAGAAAACCACATTTCCATTTACCAAATACAGGTTAGGTTAATTTTGTTCTGTTAGCAAGACAAAGTATTTTTCAGTTGCATTTCATATACAAACTGCATGTACAATAATGGAAGAAGTTATTGATTTGTGTATACGTGTTTCCTTTTAAAGCTGCGGTTTGCTAAGGTTATTTTAGATTCTAGCACTACCTTTTAGACCAGGATGAAATTCAGTCTGCCTCCCTCTTGTCATTTATTTGATTACCCTGAAGTAAAATGTTTTTTTTTCCATCAGTCAACACCATATTCAAGTTCATTGTGGAACCTTTCACAAATTGAACATTGTGCTTAATGTAAAACATGATTTGACAGTTACACTTCCTGAGTCACTTCATTGCATCTGGCTCCTTGCTGAATGTTGTTTGAAAGCGAGGATTGCATTGTACAATTCATTTTGAGCAAAGACAATTTGAAAAAAATGGTTTTGATACTCAGACCATATGTAGTTGTTGAGGGACAGTGTGGGTAATTGCACTGAAGTTCCCTTTTGTATTTCTCATTTGTGGTAGTTTACAAGACAACTGCAGGCTCTTTGAGGCACGAACTGTGCCTTCTGTGGAGCTGCTAGCATGCTTCAGCTGTTAATGCTGATATCCTTATTTGTATCATTTAGATATCCCTGGCAGAAAACAACTGGCATAACTTCATAATGAAATACTCAATGTAATTTCTCCTCTGTTATTGAGCACCACCAAGCTGAACTCTGAAATAAATCACTCTTTCTTTCTCAAACTTCTGCAGTAACAGGGAAGTAGCCCTGTTACTTAGCACACACAAGACAAAATGTCTCCAGATAAGATCTCTTATTCCAGATTAGCTGAGATCAAACAATTCTGGTCTCGGAATTAACTTTGTGTGTTCAGAGTTCAATTGTTATTTAAACAGCACTGGACTGTAAAGTTTTCTTTTAACACTTTAGAAGTACCTTTTAGTTGAATTTGTTTGGTTCTGAAAAAACCAGGAAGATGGCATAAACTGGGAATTACTCTCACTAAAATTTACCTGCCTAAAAGCTAAGCATCCAGACTATAACTATGGAGAGAAATAGGCATCTCCAGAGGATGGTTGCTTCTATCCATATTTCTTCATTAGCTGTGTAGAGGACGTCTAGATGAGAGCTGCTTGGATGGCTGAAGTTAAGCGAAGCGAGTCACTCCTGTGCCAGTATGACTAGGCAAATGTGCAAGTGCAGCGTCATCTTCAAACTGTGCAGCTCAAATACCATGTTGAGAAATTCTTACAGCCTCACATCTGTTCTGCATGAATCAGAATCAAGAATGTGAAGTTAAGGTTCCTACAGAAAACTGTCTTCATGTGTACTTCATGTGAGACTTACTGTTTCAGTGGTATGATGTTTGTTTCTGAAGTGGCAGAGCTGTAATTGTTGTCTTCTTAATACTGCCAATACTGCCAAATGCAGTAACTTGCTGCTGCCTAAAGCATTAGTTTTAAATGCTTTTTTTTCTTTATTGTGATTGAGATTTTTTCCCCCCCTTTTATTTCTGAGAAGATGTGAGTCTGTCCAAGTATGTATTCATGTGAGTCTTCTGACATTGTGGCTCATCTGTTTGCAGTGGATTTTGAAGTTGATAGTATAGGAGACTTGGTTATGCAAAGGCAGAAAGCTTTTACCATATAGGTGCAATAGGATAACAAAACAAGCCTTCCCTGCATTTACACACCCCAACTCTCATTTGCAGAGATCACTGGTAAGGATAAGAAAGGAATTTGTCTCATGTTCTTAGTCTTTGACTGCACTAATAGGTCTGTCAAGACAGTATCAGGTGTGATACTGCTTGGACAGTTGCTGGTTTGAGTCGTTTATGTTTTCATCTGTATTAACAAAGCACCATTTGGTATTTCCTATTGTGTGTAGTTTAACTTACTGATATTTCACTAGTATCCTGGTGTTGAATATATATGTCTCATTAACAGTTCCCCATAGCCACTGTTTTTTGTGGTCGACTTCCATATACATGCTGTACAATTTAGAGAACAATGTATATAGTAGCCTCCTGCATGGAAGAAAGACATTTGCAGTTGGAAGGGAACTGTTGGTAATAAATCAGCATTGTGGATTGCTGGAGCTTTTCCAGTCTTCCTCATGAGTCCTGATGCTGCTATTTTAAAAATTATGCATTCTCTGAGAGATGCCAAGTGCTCTGGCAGCATGCCCTGTCTGTTTAAATGACTCAAATATTCAAGCAAAACTGTATCAACCTTCCCAACAATATTCAGTCAGGTAAGAATAAAAAAATGACAGCTCAGGAAAGGATTTACCTTCCCCAGAAGTGTGGTGTGCTTCTGCAGCTGTACCAAGGCTGTGGTCTGAAGTACTAAGCGTTTAACCAAGTAGAATACCTTGGTAACTGTGCTTTTGTACTTGTGCTTTTTCGTTCTTGTGACTTTTTGTGTGTGTATGTGTGTATTCCTTGTATATACAAGCCTTTATTTTTCAGAAAAGAGTGTTTATTGTTAATTTTATATATTTATTTTGTCTTAAGTGATAAACTTTCAGCAAAGGTTAAAAAAAAAAAAAAAGCCAACAGTTACAGTTATCTTTCCCAACTGTATTGGGATAATGTGGTTAAGAAGCTGTTTCTGGTATGAATGCCAAAGCAGCTTGCCAGGCATTGGTGAAAGTGGATTAAAGTTTCATAAGAGATGGGTGAAGGGCTACCACCCAATGGAATCAAAAGTCTGTCAGTCTGATTTGGAATTAAGGTGGATGGAGTAGAGGGAACCAGTCCTGCACAGAAAGATGATAGCTCCTTGTACTGGAAAAAGAAGTGCCAGTGATTTTTAGTGAGAAAGCTCTACTAGCATACCATGCTGCTGCCAATATGGAACTACTGTTTAGAAAGTCAACAAATTGTGTTTTGCTGTGTTCCATGCATATTTGACAGTTGCTTAACAGAAAATATTTAGATATTAAGGCAGGCTGTGGAGAGAAAGGCTTGGTCAGTTTTCTGGCTGCAAGCAAGGTTTTTACTGACAAGGTCTAAACATGTGCTACTTCTAAAATGAGCTGGTCGTGTCAGAACTCTGAATTCCATTGTGCCAATCTGCCTCCTGTCTTTTCCCTTACTGTGTCTCACTAGGTAAATATGTCTGTAACTGTTACTTTTTTTTGAGAGGTTGTTATTGTTAGTTTCTAATTTGAAACAGTTTTGCTTTAGTTTTGTGCACTGTGAACAGTCAATTTCCTTTTCCTTTTTGTCTTCTTAG
Seq C2 exon
GAGGACTGTGTGTGTGTTGTAGTCTTCCTTCGGATATTCCTGGGGAAATATCATACTCCATATATTTTTTACATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312:ENSGALT00000013530:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]