GgaEX0012040 @ galGal4
Exon Skipping
Gene
ENSGALG00000008312 | GSAP
Description
gamma-secretase activating protein [Source:HGNC Symbol;Acc:HGNC:28042]
Coordinates
chr1:12503644-12507901:+
Coord C1 exon
chr1:12503644-12503729
Coord A exon
chr1:12504510-12504551
Coord C2 exon
chr1:12507824-12507901
Length
42 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTTTTCATACAAAGGCA
3' ss Score
7.57
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
ACTTGTGAATTTTGGATACAATGACTGTGAAGACCGAGATGTTCCACCCAAGTCTTTGAATCTTCAGGTTTTTACAAATAAAGCAG
Seq A exon
GCAGACGATACAGTTAAAAAGATTAGAGGGAAGGAATTAGAG
Seq C2 exon
GAGGACTGTGTGTGTGTTGTAGTCTTCCTTCGGATATTCCTGGGGAAATATCATACTCCATATATTTTTTACATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312_MULTIEX3-1/6=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000013530fB1351
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATACAATGACTGTGAAGACCGA
R:
TGGAGTATGATATTTCCCCAGGA
Band lengths:
133-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]