RnoINT0067990 @ rn6
Intron Retention
Gene
ENSRNOG00000028801 | Gsap
Description
gamma-secretase activating protein [Source:RGD Symbol;Acc:1563271]
Coordinates
chr4:10467702-10476555:-
Coord C1 exon
chr4:10476470-10476555
Coord A exon
chr4:10467780-10476469
Coord C2 exon
chr4:10467702-10467779
Length
8690 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
TAAATACCTTCTTTTTCCAGGGA
3' ss Score
9.4
Exon sequences
Seq C1 exon
ACTCGTCAACTTCGGCTATGATTATCGTCAAGACCAAGCCAAGCTTTGCCATCAGCCATCCCTCTGCATTTTTACCAACCACACAG
Seq A exon
GTAGAGCCGGGGTCGTGCCTACCAATTTTCATTTGAACTTGTATATAAGTTCTATGCAGTTTGTATAGAATTTGAGTTCTGTAGAAAATGCCATTACGGTTCCACTATGTGAGCAATATTGTTAAATAAGCTGTTATTTATGAAAGTACTGTTAAAGAAAAAGAAAATGAATTATAACAGCCACATTATTATAAAAAACAAGTGGATATTACATATACATTCATAGGTTGAACCAGTATAATTCTACTCCTTTCTGTCACTTCCATTATAATTACACTCACACACACACACACACACACACACACACACACACACACACACACACGCTATATTTATGGAAGAAACCATCACCAACAGGGTTATTGTTCTAATAGGTTTTATTGGTATTGTTTTAATAGAGTGGATATATTCACATTTATTCAATGCAAAATTTCCCATGAGGGTAGAAATGCTTTCTGTGTCAGCCTTACTGATGTGTTGGGTTCTAAATATCTATTTATTTATTTTTATATTTTTTGCATGTATTGTATGTCTGTGGGCGCATGTGTGCCATTCTATGTACGCATGTGGAGTTCAGAGGACAAATTATGGGAGGGAATTCACCTCGTGGGCTCCAGGATCGAGTTCATTTCGTCAGGCCTGGTGGCAAGTGCTTTTACCTGTGGCGCTTCCTTACGGGCCCATGTGTAGAATCTAACCCTATGCACCTGGGTTTGAATGCTATGTCATGGGCCGCTGTTGTAGACGTCAGAGCTTGATACATACCTGTTTATGTAGAGAACATGGAGAGAGGGTTGTTGGGATGGTGCATGTGAGCAAACTATGCTATATGCCTGTAAAGTGTTGGGGTCTGGGAATCGCGCACAAACTACTCCGACAGCCAATCTCAGTCAAACAGGTGTGGTTTGTTCAGCACCACACCCCAAGACATAAAACATACGTCAGACTTGGGAGCCAATTGTGACCTTGAGTCAAGATCCTACAGGGCCTTTTAAGCCTGAGGTCTATAAACATCTATGTTAAGTTATTCCACCAATCAGGATTTAGGGATGGGGATTTCCTTAGGAACACGTCTTTGTTGTACACTTATCCTGCTCCCATTGGCTGGGGTATTCAACTGTGGCAGGCAGGAGACTTGGGCTGTCTAACATTCAGGTCTTAACTTGCCAACTAGGATGTCAGTTACCCACATACCTGTTACATGTCTCTTCCTGACAAGCAGGGTGTCAGTTCCCAGGGAGGATTTAGGAACTCAAACTTTACTCAATCCCTACTCAAAATGGAAGTCTTATTTCAAATAGCAGGTGTCCCTCTTATGTTGGGTCCATCCCAGGGGCAGCTTATAAAGGCAAATACCGTTAAAGCTCATACCCAGGTACAGGAGGTGCTGCTGGGATGTTGGTTTGGGTCCAAGCCTATTGCGGCTAACTCTACAAAGCTTCTACCAGCTTCTATCACGATTGGTTTCCAAGGGCACAGAATATGTAATCACCTTGGGCATAAGAAAGTTTCTAGTAACAATGGAAACAACGTATGAGAAAGTTTCCTTATAATATTAGTAATAGTAAAAAAAGAAAAAAAAAAAAAGACAGGCCAGACAGGCAGCAGCTACCTAGGCTTTAACATTCCACCTTAACATGAAGAAACAATGTCACAGTTAGGCCTGCCCTACGTGACCTTAATATGCAGTGATAATTGGTAATATAAGGCAGTCACCATGGCCGCTGGGTGCAAAAAGGTTAGAGGGGGCAGGGGAAGTCCAGACGAGATCCAAGTCACACTTGAGACCATGGTGACTTGAGTACAATGGGCAAAGAATATAGAGGGAAAGAGGGTGTGATGTATCTCAGAGATGCCCTCCTGTAACGAGGTGAAGAGGAGAGGCCCTTGGGTGTCTGCATCAGCAGGTGAACAGTGATGGTGTTTACTAGGGTGTGGGGGTTGTCAGAATGTGGCTAGCATTTGAAACCACAGGAGGAGGGTAGGGTGCGAAGGGGAGGTATTGGGGAGTAATATCTGGGAGTTTAAGTGTTAGGAGTGTCCAATTGAAAGGGTAAAAGGATGCCTCATGAGGAGAGAGCTGGGCAAGGATGATAGCACGAACCCAGAGGCAGAGTGAAGTCTCCCCCAGGGGAAGGGCTAAGTGTATCTCCAGTGGTGGAGTTCCCAGGGGCTGTCCTGTGAGCCGCCTGCCTTGGGCGACTGGAGGGAGACCTGGGCTCTGCTTAAGTTGAGCATCACAGAGAGATAGCGAACTTGTGAGAGGGCAGCAGCAGAGGGTGGAATTGGGATTTAGGGAATTTTTTTTTAAAAAAAACTCTGGTTGTTTAAATGTGTACAGGACATATTTAGTGGGGAAGGAAAATGGGACAAGTCCTGGATGAAAGGACTGATATGTTTTGATGGTGGGAGGAAATGAGAACCAGACTCACAGGGTTGAACTCCGTGGGAGCTTCCCTGCCGCCTTTGCTGATATAAACAGCCACTTCACGCTTTGAATCTCTGCGGAGTTTCCCTTTTTAATTTACCCAGAGGAACTCATGAACAGTCACAGCCATAATGTACAAGATGGCTACTACAACTCATTTAATGACATATTGGCTTCTTCTGGTAGGAAACATAGGAGTATCTCTTCTTTTCCTTTCCTGGCAATGTGTGAGAGCGTAGAAAAGGGGCCTTGTTCTTCAGTCAGCTTTGCAGGAAAGAACGTAGATCTGGTTCAAATGAACTCCCAGGGTTAAGGTAAAAATCTGGAGAAGCATTTTGTTGTTGTTGTTGTTGCTGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTTGCTGTTGTTGTTGTGGAGTAGTAAGTTGCCAGTTCTCATACCTTTTTCCAGTTAGGTTTAAAAGCAAGTTCTTACCTCCACAGTTAAAATAAACAAGATTGTGGTGTAGTTATGCAGTTGGTGAAAGAACCCTGTCTATAGGCCAGAATAAATAGAAAACAGGTTATTCCAAATGAATTGGCAAATTGCTCTTTTTGACTCTATGAAGAATGGAGTTGGAATTTTGATGGGGATTGCATTGAATCTGTAGATTGCTTTTGGCAAAATGGCCATTTTTACTATATTAATCTTGCCAATCCATGAGCATGGGAGATCTTTCCATCTTCTGAGGTCTTCCTCAATTTCTTTCTTCAGAGGCTTGAAGTTGTTGTCACATAGATTTTTTTCCGCTTCCTTGGTTAGAATCACACGGAGGCATTTTACATTATTTGGGACTATTGTGAAGGGTGCCATTTCCCTAATTTCTTTCTCAGCCTGTTTATCTGTTGAGTAGAGGAAGACCACTGATTCATTTGAGTTAATTTTATATCCAGCCACTTTGCTGAAAATGATTATCAGGTTTAAGAGTTCTCTGGTGGAATTTTTGGGGTCACTTAAGAATTCTATCATAACATCTGTAAGTAATGATATTTTGACTTCTTCCTTTCCAATTTGTATCCCTTTGACCTTTTGTTGTCTAATTGCTCTGGCTAGGCCTTGGAATACTATACTGGATAGGTAGGGAGAGAGTGGGCAACCTCGTCTAGTCCCTGATTTTAGTGGGATTGCTTCAAGTTTCTCTTCACTTAGTTTGATGTTGGCTACTGGTTTGCTGTATATTGATTTTACTATGTTTAGGTATGGGCCTTGAATTCCTGATCTCTCCAAGACTTTTATCATGGAGGGGTGTTGAATTTAGTCAAATGCTTTCTCAGCATCTACTGAGATGATCATGTGGTTCTTTTTTTTTTTTAATTTTAGAGTTTTTACTTTTCTTTTTCATTGTGCTAGTTTTTTTTTGTTTTTGTTTTTTTCTCTCTTGTGTGTTACATTATTTATTTTTTTTAAATCTTTTTTTTAAAATTAACTTGAGTATTTCTTATATACATTTCGAGTGTTATTCCCTTTCCCGGTTTCCAGGCAAACATCCCCCTCCCCAACCTCCCCCTCTTGCCGCCCTCCCCCCAACAATCTAGTTCACTGGGGGTTCAGTCTTAGCAGGACCCAGGGCTTCCCCTTCCACTGGTGCTCTTACTAGGATATTCATTGCTACCTATGAGGTCAGAGTCCAGGGTCAGTCCGATCATGTGGTTCTTATCTCTGAGTTTGTTTATATAGTGGATTACATTGAATGATTTCTGTATATTAGACCAGCCCTGCATCCCTGAGATAAAGCCTATTTGATCATGATGGATGATCGTTTTGATGTGTTCTTGGATTTGGTTTGCAAGAATTTTATTGAGTATTTTTGCATCAATATTCCTCAGGGAAATTGGTCTGAAGTTCTCTTTCTTTGTTGGGTCTTTTTGTGATTTAGGTATAAGTATAATTGTGGCTTCTGTTTCTATTTTATGGAATTGTTTGAAGAGTATTGGTATGAGGTCTTCTTTGAAGGTCTGATAGAATCATTTGGAATTACAAAAAACCCAGGATAGCAAAACTTTTCCCAACAATAAAGGACTTCTGGGGGAATCACCATCCCTAACCTCAAGCAGTATTACAGAGCAATAGTGGTAAAAACTGCATGGTATTGGTACAGAGACAGGCAGGTAGATCAGTGGAATAGAATTGAAGACCCAGAAATGAACCCACATACTTATGATTATTTGATCTTTGACAAAGGAGCTAAAACCATACAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGTTCAATTGGAGGTCAGCATGTAGAAGAATGCAAATCAATCTATTCTTATTGCCTTATACAAATCTCAAGTCCAAGTGGATCAAGGACCTCCCCATAAAACCAGATACATTGAAACTAATAGAAGAGAAAATGGGGCAGAGCCCTGAATACATGGGCACTGGGGAAATTTTTCTGAACAGATCACCAATGGTTTATGTTCTAAAATCAACAATAAACAAATGGGACCTCATAAAATTGCAAAGCTTCAGTAAGGCAAAGGACACTGTCATTAGGGCAAAACAGCATCCAACAGATTGGGAAAAGAACTTTACCAATCCTACATCTGATAGAGGGCTAATATTCAATATATACAAAGAATTCAAGTTAGAGTCCAGAGAATCAAATAACCCTATTTAAAAATGGGGTACAGAGCTAAACAAAGAATTCTCAACTGAAGAATATTGAGTGGCCATGAAGCACCTAAAGAAATGTTCAACATCCTTAGTCATCAGGGAAATGCAAATCAAAACAATCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATAAAAAACTCAGGTGACAACAGATGCTGTCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTTTTTGTGGGATTGCAAGCTGGTACAACCACGCTGGAAATCAGTCTGGTGGTCCCTCAGAAAATTGGACATAATACTACCCGAGGACCCAGCTATACCTCTCCTGGGCATATACCCAAAAGATGCTCCAACATACAACAAAGACACGTGCTCCACCATGTTCATAGCAGCCTTATTTATAATAGCCAGATGCTGGAAAGAACCCAGATGCCCTTCAACAGAGGAATGGATACAGAAAATGTGGTATATTGACACAATGGAGTACTACTCAGCTATCAAAAACAATGACTTTATGAAATTCTTAGGCAAATGGATGGAACTAGAAAATACCATCCTGAGTGAGGTAACCCAATCACAAAAGAACACACATGGTATACACTAACTGATAAGTGGATATTAGTCCCAAAGCTTGGAATACCCGAGATACAATTCATAGACCACATGAAGCTCAGAAAGAAGGACCAAAGTATGGATGTTTTAATCTTTCTTAGAAGGGGGAACAGAGTACTAACAGGAGGAAATATGGAAGTGTGGAGCAGAGACTGAAGGAAAGGCCATGCAGAGACAGACCCATCTGGGGATTCACTCCGTATACAGTCATCAAACTCAGATACTATTGTAGATGCCAGGAAGTGCTTGCTGACAGGACCCTGACATAGCTGTCCCCTGAGAGGCTCTGCCAGAGCATGATGAATACAGCGGTGCATGCTCGCAGTCAACCATTGGACTGGGAACGGGTTCCCCAATGGAGGAGTTAGGGGAAGGACTGAAGGAGCTGAAGGAGTTTGCAACCCCATAGGAAGAACAACAATATCAACCAACCAGACCTTCCAGAGCACCCAGGGACTAAACCACCAACCAAAGAGTACACATAGAGAGACCATGGCTCCAGCTGCATATGTAGCAGAGGATGGCCTTGTCAGACATCAAGAGGCCCTTGGTCCTGTAAAGGCTTGATGCCCCAGTGTAGAGGAATGCCAGGGCAGGGAGGTAGGAGTGGGTGGGTCAGGGAGCACCCTCATGGAGGCAGGGGGAGGGAGGATGGGATGGGGGTTTCCAGAGGGGAATCCGGAAGAGGGGATAACATTTGAAATGTAAATAAAAAAATCCAATAAAAGAAAAAAAGGAAAAGAAAACAGGTTTATTGAGTATACTGCAAAAAGAGCAGTTGGTATGGCCCTGATAGAATCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGTGGATGGAAGTGTCTATTTCAGAGGGAGCCACTTACCATGCCATTTCTTATGTGAAATTAGCCCCTTGCAAATGGGAAAGGTTCTGTGGTCTAGGGCTGCAGATAATTTTGCTTGGCTGATCTGTTCTGCTGGTCACCGTTGGGGAGAACCGGGCCATGATTCTGTTGCTTGTTTGTTTTGAGTTTTTGTTTGAAGCTTTCTGGACCAAGCTTCCCTTTCTGACCTTTCCTCCACTGAGGTCTACTTCAGCAAAGTAAGATTAGAGAAAGTTGGAAAATTGCCTCATTCGGACCTGGCTCTGGGATAGTGTAAATCTGGGCTGTAAAACCAGGATGCATCGCTTGAGAAAGGGTGGCAGATAAATCGAGGGCCTCACATGCCGGTTACCCCTCCCTTCCTGTTAAGGACAGCAATGTGATGGTGATTGACAGCCATTCATCATTAACCACCCCTCCACCTCCCTACCCCCAACCCTGCAGGTACCAACTTCCTCCAAGCTTCTTTGTCCTGAATGCCCCTGCTCTAGGAAGTGAAGCTGGGTGCAGTCCAAGCAATGAAAGGCTAAAATCTGAAGGATGGGTGTGTGTGCTTCTGAGAGTCTACAGAGGATGGAGGACAAAGTGGTGGGGCTCTTGTCAGGGCTGCCTGTGAATCACCTAAGACTATGAACTCATACAGACATTTCTAGAAAAATCTATGACCATAGGAAGGCCAACCAGACTTCATCTCTGAAAAGAAAATATTCTCATTGCTTCCATATCTGATGGTCAGCCCCGACAGTGGCTCCTGCTGTGGTTAAACTACATTAGCTGCCTTTGTTTCTGTGCACCACCTGCTGAGAGGCTGCAGCCACGAGTGGGGGCGACTGAACCCTGTCCTTCCTGCTTCTACAATGGCAAGTTCTCAGAGTCAGGCCAGTGATGGAACATTTCACGGCGGCTTTCAGTAATTGTTCCAATGAGATAATTTCCCTTGGAAAACTTGTCTCGATAGTTTTCTTTGTCTAACTGGTTCTCAAAAGCTAGCCGGTGAGGAGATGTTCTCTTCATCAGTGATGAATATTTACTAAAAGTCTCTGGATATTACATTAAGAACGTATTTTGTTTCTTCAAACGGTGACTTCCTCCCACTTCTAAATAGCACCTAAATTATTCCGGAGGATGAATAGCTGCTAATGTTTAGAGCCAGATAGGAGTATTTTTGCCAGAGATTGAGAGGGATTATTTGGTTCTTGTGGAAGAAGCTCGTAAGTGGTTTCTGTATTTTCTAAATGTACGGATGAGGAAACTGGGGCTTAGAGAACTAACAGTAAAGGCACTGCGCTTCATGGACCAAGAACTCAAGAGACAGAGGGACAAAGACTGAGGCAAAGGCAGCCTGCTGTGCTCAGTGAATTCCAGACCAGCCAGGGCAGGCTTCCCTGCAGAACTCTAAGGAAACAAAGCAAACCTGCCTCAGAGATGCTCAGCCAGGAAAGCCAATTTCAGAGTCTGAAAGCGTCTGAAGCCTTTGTGGGTCAGGTGATTTTATAAGGGATGCTCAACACAGAGCAGTTTAATGATATCGTCTTTATTCCTCAGCGCCTGACATTAGCCACAGATACTGGAGGACAGGAATACTGAATTTTACATAGTGAGAAAGAAGGGGAGGCCTTCTTTCTAGGTGCTAGGTGGTCCCCTTTGACGTGGGCCCACGCTGTCAGAGCCCCAGCCATGATGAGTGTAGCCTCAAATACTGTACTGAGAAAAAAAAAAAGAAATACTGGATGCTTTCTTTGAGTTTGGGGAGCGGGGATTCAGAGCCATTCGAGATGCCTTCGGGTGGGGGGGCAGCACAGGATAAGACAGCAGTGTGTGCCCACTCACCAGGACTTGGGTGGGACCTTTCCTAGACTACAGTAGCCTCTCACGTATCTGTTCGCTTCATCGCCTGCCACAGTGCACTGCCTCTAACCGTGGATGTTAAGGGCCGACTTGAAATTTCATAGCAACGTGATAATATCACCTTGTGAATTTAGGAACAGTCGATGAAGCAAGATGGAGGACATCTAAAGCAATAGAAGTAGGTGAATAATATCTCAGGGAAATTTAGGCACGGATTGTTTAAATACCTTCTTTTTCCAG
Seq C2 exon
GGAGTTTGTGTGTGTGTTACAGCCCGAAGTCTGACTCTTGGAAAGAAATCACGTATTCAGTGTTTTACCTCCATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028801:ENSRNOT00000039953:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]