MmuEX0036923 @ mm10
Exon Skipping
Gene
ENSMUSG00000025838 | Pramel6
Description
preferentially expressed antigen in melanoma like 6 [Source:MGI Symbol;Acc:MGI:2156390]
Coordinates
chr2:87506565-87508744:+
Coord C1 exon
chr2:87506565-87506629
Coord A exon
chr2:87507074-87507137
Coord C2 exon
chr2:87508431-87508744
Length
64 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTATTTTTGCGACAGTCC
3' ss Score
6.84
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AAAGCCACTTGGAGTCACCACTTATCGATGCTGGGATCTAGAGATTTTTACCGTGTTCAAATCAG
Seq A exon
TCCCACTCTGTATATCAAGGTGGCATTGAACTCCAGGAAGGAAATTCTGAGGGGAGTTTGAGAG
Seq C2 exon
GATCATTTTTCCTGAAAATCAGTCACAATGAGTGTTGACTCCCTACCCACCCTCTTTCAGTGGGCAAGAGACAATCTACTGAAGGAGGAAGCTTTAGCCATTTCTGCTCTGGAGGAACTGCCCATTCATCTATTCCCAGAGATGTTCAAGGTAGCCTTCACTGATAGGCATACAAAGGTCCTGATTGCAATGGTGTCTGCCTGGCCCTTCCCATGCCTTCCTGTAGGAACCCTAATAGAGGACCCACATCTGGAGACTTTGAAAGCAGTGCTTGATGGGTTGAATGTCCTGGTAACAGGGAAGGTTCATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025838_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTCACCACTTATCGATGC
R:
AGATTGTCTCTTGCCCACTGA
Band lengths:
133-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types