MmuEX0036977 @ mm10
Exon Skipping
Gene
ENSMUSG00000029913 | Prdm5
Description
PR domain containing 5 [Source:MGI Symbol;Acc:MGI:1918029]
Coordinates
chr6:65886085-65901859:+
Coord C1 exon
chr6:65886085-65886178
Coord A exon
chr6:65887928-65887988
Coord C2 exon
chr6:65901774-65901859
Length
61 bp
Sequences
Splice sites
3' ss Seq
TCATCTGACTTTACTTGTAGGAA
3' ss Score
9.16
5' ss Seq
GAGGTATTA
5' ss Score
6.46
Exon sequences
Seq C1 exon
ACACACACAGGAGAAAAGGAGAAAGTCTGCCCATATTGTGGCCAGAAATTTGCCAGCAGTGGGACCCTGAGAGTTCACATCCGGAGCCACACAG
Seq A exon
GAAGAGTGAACAGCAGAGAAGCACAAACGACTAATGTTACTCATTACTTTGAATGTTTGAG
Seq C2 exon
GTGAGCGCCCCTATCAATGCCCGTACTGTGAAAAAGGTTTCAGTAAAAATGACGGACTGAAGATGCACATTCGTACTCACACCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029913_MULTIEX1-14/18=13-17
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=0.381 C2=0.136
Domain overlap (PFAM):
C1:
PF042167=FdhE=FE(44.9=100),PF156161=TerY-C=FE(41.9=100),PF134651=zf-H2C2_2=PD(85.7=56.2),PF134651=zf-H2C2_2=PU(38.5=31.2)
A:
NO
C2:
PF042167=FdhE=PD(21.7=51.7),PF156161=TerY-C=PD(35.1=89.7),PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
Main Inclusion Isoform:
ENSMUST00000031976fB3160
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGAAATTTGCCAGCAGTG
R:
TGGTGTGAGTACGAATGTGCA
Band lengths:
138-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types