Special

ENSMUSG00000029913 @ mm10

Biotype
protein_coding
Gene Symbol
Prdm5
Description
PR domain containing 5 [Source:MGI Symbol;Acc:MGI:1918029]
Coordinates
chr6:65778988-65937010:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
0
NA
+
72.13
60.69
0
Alternative 5'ss
50
chr6:65856124-65856173
+
27.87
60.69
0
Exon Skipping
52
chr6:65861088-65861139
+
6.95
24.26
0
Exon Skipping
210
chr6:65856856-65857065
+
2.83
55.49
0
Exon Skipping
175
chr6:65855949-65856123
+
67.82
89.48
0
Exon Skipping
86
chr6:65901774-65901859
+
95.45
35.86
0
Exon Skipping
175
chr6:65857643-65857817
+
66.35
90.42
0
Exon Skipping
122
chr6:65859357-65859478
+
93.32
28.76
0
Exon Skipping
80
chr6:65862915-65862994
+
76.05
91.93
0
Exon Skipping
85
chr6:65869181-65869265
+
85.84
68.2
0
Exon Skipping
158
chr6:65870312-65870469
+
88.83
70.14
0
Exon Skipping
94
chr6:65881049-65881142
+
93.41
64.38
0
Exon Skipping
161
chr6:65883523-65883683
+
92.24
53.1
0
Exon Skipping
94
chr6:65886085-65886178
+
95.68
41.87
0
Intron Retention
1519
chr6:65856124-65857642
+
15.11
39.62
0
Intron Retention
1539
chr6:65857818-65859356
+
16.4
41.07
0
Intron Retention
3436
chr6:65859479-65862914
+
14.89
34.84
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000138738 PRDM5 1-to-1
Human hg19 ENSG00000138738 PRDM5 1-to-1
Rat rn6 ENSRNOG00000023679 Prdm5 1-to-1
Cow bosTau6 ENSBTAG00000012111 PRDM5 1-to-1
Chicken galGal4 ENSGALG00000011963 PRDM5 1-to-1
Chicken galGal3 ENSGALG00000011963 PRDM5 1-to-1
Zebrafish danRer10 ENSDARG00000006288 prdm5 1-to-1
Fruitfly dm6 FBgn0263072 CG43347 1-to-1