MmuEX0036988 @ mm10
Exon Skipping
Gene
ENSMUSG00000029913 | Prdm5
Description
PR domain containing 5 [Source:MGI Symbol;Acc:MGI:1918029]
Coordinates
chr6:65869181-65881142:+
Coord C1 exon
chr6:65869181-65869265
Coord A exon
chr6:65870312-65870469
Coord C2 exon
chr6:65881049-65881142
Length
158 bp
Sequences
Splice sites
3' ss Seq
TCTCTGCTCATTCTTCCTAGAAA
3' ss Score
8.47
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ATTCATGAGATATTTGATTGTCAAGAATGTATGAAAAAGTTTATTTCTGCTAATCAGCTGAAGCGTCACATGATTACCCACTCAG
Seq A exon
AAAAGCGGCCTTATAACTGTGAGATCTGTAACAAGTCCTTCAAGAGGCTCGATCAAGTGGGCGCCCACAAAGTGATCCACAGTGAGGACAAACCCTACCAGTGCAAGCTCTGTGGCAAGGGCTTTGCTCACAGAAACGTTTACAAGAACCACAAGAAG
Seq C2 exon
ACCCACTCCGAGGAGAGACCTTTCCAGTGTGATGCATGTAAAGCCTTGTTCCGCACGCCCTTTTCTCTGCAGAGACACCTGTTAATCCACAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029913_MULTIEX1-10/18=9-11
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.029 A=0.038 C2=0.000
Domain overlap (PFAM):
C1:
PF128742=zf-met=PD(4.3=3.4),PF144711=DUF4428=FE(56.0=100),PF134651=zf-H2C2_2=PU(38.5=34.5)
A:
PF144711=DUF4428=PD(2.0=1.9),PF134651=zf-H2C2_2=PD(57.7=28.3),PF121713=zf-C2H2_jaz=PU(84.0=39.6)
C2:
PF121713=zf-C2H2_jaz=PD(8.0=6.2),PF134651=zf-H2C2_2=PU(38.5=31.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAAGCGTCACATGATTACC
R:
TGTTGTGGATTAACAGGTGTCTCTG
Band lengths:
123-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types