RnoEX0069367 @ rn6
Exon Skipping
Gene
ENSRNOG00000023679 | Prdm5
Description
PR/SET domain 5 [Source:RGD Symbol;Acc:1588700]
Coordinates
chr4:96716448-96762599:+
Coord C1 exon
chr4:96716448-96716570
Coord A exon
chr4:96745364-96745521
Coord C2 exon
chr4:96762506-96762599
Length
158 bp
Sequences
Splice sites
3' ss Seq
TCTCTGCTCATTTTTCCCAGAAA
3' ss Score
8.29
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GTGCGTGGGAGCAAGGGAGAAGTTCTGTATATTTTGGATGCTACCAACCCGAGACACTCCAACTGGCTTCGCTTTGTACATGAGGCACCATCTCAGGAGCGGAAGAATCTGGCTGCAATTCAA
Seq A exon
AAAAGCGGCCTTATAACTGTGAGATCTGTAACAAGTCATTCAAGAGGCTGGATCAAGTGGGTGCCCACAAAGTAATCCACAGTGAGGACAAACCCTATCAGTGCAAGCTCTGTGGAAAGGGATTCGCTCACAGAAACGTTTACAAGAACCACAAGAAG
Seq C2 exon
ACTCACTCGGAGGAGAGGCCCTTCCAGTGTGACGAATGTAAAGCCTTGTTCCGCACCCCCTTTTCTCTGCAAAGACACCTGTTAATCCACAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023679_MULTIEX1-6/10=C1-7
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.195 A=0.038 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=PD(57.7=28.3),PF121713=zf-C2H2_jaz=PU(84.0=39.6)
C2:
PF121713=zf-C2H2_jaz=PD(8.0=6.2),PF134651=zf-H2C2_2=PU(38.5=31.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGAGCAAGGGAGAAGTTC
R:
TGTGGATTAACAGGTGTCTTTGCA
Band lengths:
210-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]