DreEX6078717 @ danRer10
Exon Skipping
Gene
ENSDARG00000006288 | prdm5
Description
PR domain containing 5 [Source:ZFIN;Acc:ZDB-GENE-040708-1]
Coordinates
chr23:1991353-1995594:-
Coord C1 exon
chr23:1995510-1995594
Coord A exon
chr23:1993443-1993600
Coord C2 exon
chr23:1991353-1991446
Length
158 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTGTGTAGAGA
3' ss Score
7.45
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GTTCATGAGGTGTTTGACTGCGACGCCTGTGATAAAAAGTTCATCTCCACCAATCAGCTGAAGAGACACATGATCACACACTCAG
Seq A exon
AGAAGCGTCCGTACACCTGTGAGATCTGCAGCCGCAGCTTTAAGCGTCTGGATCAGGCCACGGCTCACAAGATCATCCACAGTGAGGACAAACCGTACAAGTGTAAGCTCTGCTGGAAGGAGTTCGCCCATCGCAACGTCTACAAGAACCATAAAAAG
Seq C2 exon
ACTCATTCAGAGGAGAGGCCTTTCCAGTGTGAAGAGTGTAAGGCTCTGTTTCGTACCCCGTTCTCTTTACAGCGCCACCTCCTCATTCATAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006288-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(38.5=34.5)
A:
PF134651=zf-H2C2_2=PD(57.7=28.3),PF134651=zf-H2C2_2=WD(100=45.3),PF134651=zf-H2C2_2=PU(23.1=11.3)
C2:
PF134651=zf-H2C2_2=PD(69.2=56.2),PF134651=zf-H2C2_2=PU(38.5=31.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATGAGGTGTTTGACTGCGA
R:
TGTTATGAATGAGGAGGTGGCG
Band lengths:
178-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]