Special

ENSMUSG00000029913 @ mm9

Biotype
protein_coding
Gene Symbol
Prdm5
Description
PR domain containing 5 [Source:MGI Symbol;Acc:MGI:1918029]
Coordinates
chr6:65728956-65886371:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
0
NA
+
72.09
56.67
0
Alternative 5'ss
50
chr6:65806118-65806167
+
27.91
56.67
0
Exon Skipping
52
chr6:65811082-65811133
+
10.19
19.9
0
Exon Skipping
61
chr6:65837922-65837982
+
1.76
25.19
0
Exon Skipping
175
chr6:65805943-65806117
+
63.13
90.57
0
Exon Skipping
86
chr6:65851768-65851853
+
95.92
34.78
0
Exon Skipping
175
chr6:65807637-65807811
+
63.76
88.24
0
Exon Skipping
122
chr6:65809351-65809472
+
61.63
84.43
0
Exon Skipping
80
chr6:65812909-65812988
+
61.64
94.87
0
Exon Skipping
85
chr6:65819175-65819259
+
85.8
66.67
0
Exon Skipping
158
chr6:65820306-65820463
+
88.45
71.43
0
Exon Skipping
94
chr6:65831043-65831136
+
93.29
65.57
0
Exon Skipping
161
chr6:65833517-65833677
+
92.41
53.33
0
Exon Skipping
94
chr6:65836079-65836172
+
96.46
42.11
0
Intron Retention
1519
chr6:65806118-65807636
+
13.36
31.92
0
Intron Retention
1539
chr6:65807812-65809350
+
16.3
40.48
0
Intron Retention
3436
chr6:65809473-65812908
+
13.85
34.84
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000138738 PRDM5 1-to-1
Human hg19 ENSG00000138738 PRDM5 1-to-1
Rat rn6 ENSRNOG00000023679 Prdm5 1-to-1
Cow bosTau6 ENSBTAG00000012111 PRDM5 1-to-1
Chicken galGal4 ENSGALG00000011963 PRDM5 1-to-1
Chicken galGal3 ENSGALG00000011963 PRDM5 1-to-1
Zebrafish danRer10 ENSDARG00000006288 prdm5 1-to-1
Fruitfly dm6 FBgn0263072 CG43347 1-to-1