MmuEX0036983 @ mm9

Exon Skipping

Gene

ENSMUSG00000029913 | Prdm5

Description

PR domain containing 5 [Source:MGI Symbol;Acc:MGI:1918029]

Coordinates

chr6:65836079-65878015:+

Coord C1 exon

chr6:65836079-65836172

Coord A exon

chr6:65851768-65851853

Coord C2 exon

chr6:65877911-65878015

Length

86 bp

Sequences

Splice sites

3' ss Seq

GGCATTTTCTTTATTTGTAGGTG

3' ss Score

8.63

5' ss Seq

AGGGTAAGA

5' ss Score

9.21

Exon sequences

Seq C1 exon

ACACACACAGGAGAAAAGGAGAAAGTCTGCCCATATTGTGGCCAGAAATTTGCCAGCAGTGGGACCCTGAGAGTTCACATCCGGAGCCACACAG

Seq A exon

GTGAGCGCCCCTATCAATGCCCGTACTGTGAAAAAGGTTTCAGTAAAAATGACGGACTGAAGATGCACATTCGTACTCACACCAGG

Seq C2 exon

GAGAAGCCCTACCAGTGCTCAGAGTGCAGCAAGGCCTTCAGCCAGAAGCGGGGCCTCGATGAACACAAGAGGACACACACAGGAGAAAAGCCTTTTCAGTGTGAC

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000029913_MULTIEX1-10/11=9-11

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

Show structural model

Features

Disorder rate (Iupred):

C1=0.117 A=0.136 C2=0.200

Domain overlap (PFAM):

C1:

PF156161=TerY-C=FE(41.9=100),PF042167=FdhE=FE(44.9=100),PF134651=zf-H2C2_2=PD(85.7=56.2),PF102764=zf-CHCC=PD(85.0=53.1),PF132481=zf-ribbon_3=PD(88.9=50.0),PF134651=zf-H2C2_2=PU(38.5=31.2)

A:

PF156161=TerY-C=PD(35.1=89.7),PF042167=FdhE=PD(21.7=51.7),PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5),PF0013017=C1_1=PU(11.8=20.7)

C2:

PF134651=zf-H2C2_2=PD(53.8=40.0),PF0013017=C1_1=FE(66.7=100),PF134651=zf-H2C2_2=PU(68.0=48.6),PF051298=Elf1=PU(31.9=62.9)

Main Inclusion Isoform:

ENSMUSP00000031976