BtaEX0028369 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012111 | PRDM5
Description
PR domain containing 5 [Source:HGNC Symbol;Acc:HGNC:9349]
Coordinates
chr6:4648284-4728484:+
Coord C1 exon
chr6:4648284-4648377
Coord A exon
chr6:4670307-4670392
Coord C2 exon
chr6:4728380-4728484
Length
86 bp
Sequences
Splice sites
3' ss Seq
AGCCTGCCTTTATCTTGTAGGTG
3' ss Score
9.95
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
ACGCATACAGGAGAAAAGGAGAAAATCTGTCCATATTGTGGCCAGAAATTTGCCAGCAGTGGTACACTGAGAGTTCACATCCGTAGCCACACAG
Seq A exon
GTGAGCGTCCCTATCAGTGCCCTTACTGTGAGAAAGGATTCAGTAAAAATGACGGCCTGAAGATGCACATTCGTACTCACACCAGG
Seq C2 exon
GAGAAGCCATACAAGTGCTCAGAGTGCGGCAAGGCCTTCAGCCAGAAGCGCGGCCTGGACGAGCACACGAGGACACACACCGGGGAGAAGCCTTTCCAGTGCGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012111_MULTIEX2-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.138 C2=0.171
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(69.2=56.2),PF134651=zf-H2C2_2=PU(38.5=31.2)
A:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
C2:
PF134651=zf-H2C2_2=PD(53.8=40.0),PF134651=zf-H2C2_2=PU(68.0=48.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATATTGTGGCCAGAAATTTGCC
R:
GTCGCACTGGAAAGGCTTCTC
Band lengths:
169-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development